miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 58542 0.65 0.832364
Target:  5'- -gGCCGgucAGCGUgGCgGCCuacauggagcccugGCACAGCCAg -3'
miRNA:   3'- gaCGGU---UUGCG-CGgUGG--------------CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 108889 0.66 0.826571
Target:  5'- -gGCCGAGCGcCGCgGCCaGCG-AGUCAg -3'
miRNA:   3'- gaCGGUUUGC-GCGgUGG-CGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 106404 0.66 0.826571
Target:  5'- -cGCCucGCaGCGUgGCCGguUGGCCGa -3'
miRNA:   3'- gaCGGuuUG-CGCGgUGGCguGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 55772 0.66 0.826571
Target:  5'- -gGCCAGGgGCagcgagGCCACCaCGCuGGCCAg -3'
miRNA:   3'- gaCGGUUUgCG------CGGUGGcGUG-UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 128221 0.66 0.826571
Target:  5'- uCUGCCAGccucagGCaGC-CCACCGCggGCgAGCCGc -3'
miRNA:   3'- -GACGGUU------UG-CGcGGUGGCG--UG-UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 126759 0.66 0.825736
Target:  5'- gUGCCAAuuuucuGCGCacguccuGCCcccccuccucGCCGgGCAGCCGg -3'
miRNA:   3'- gACGGUU------UGCG-------CGG----------UGGCgUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 13359 0.66 0.825736
Target:  5'- -gGCCAccuccucccucAcCGCGaCCACCGUggucugcGCGGCCAc -3'
miRNA:   3'- gaCGGU-----------UuGCGC-GGUGGCG-------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 10537 0.66 0.818149
Target:  5'- cCUGCCAAGgGCGCUGagaCGC-CAGUUc -3'
miRNA:   3'- -GACGGUUUgCGCGGUg--GCGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 58831 0.66 0.818149
Target:  5'- aCUG-CAAACGCcaccgaagaaaCCACCGCugAGCUg -3'
miRNA:   3'- -GACgGUUUGCGc----------GGUGGCGugUCGGu -5'
28858 3' -58.5 NC_006146.1 + 14142 0.66 0.818149
Target:  5'- -aGCCAGguguACGCGCUgGCCGUGgAGCUg -3'
miRNA:   3'- gaCGGUU----UGCGCGG-UGGCGUgUCGGu -5'
28858 3' -58.5 NC_006146.1 + 62664 0.66 0.813876
Target:  5'- gUGCCGAGCGaCGCCuccacgaACCagaugaagguuuaCACGGCCAc -3'
miRNA:   3'- gACGGUUUGC-GCGG-------UGGc------------GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 20503 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 14347 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 33414 0.66 0.809563
Target:  5'- -cGCCugggcaccGCuGCGCCGCCGCuCGGUCc -3'
miRNA:   3'- gaCGGuu------UG-CGCGGUGGCGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 63417 0.66 0.809563
Target:  5'- -aGCgCAGugGCgGCCcUCaGCGCGGCCAu -3'
miRNA:   3'- gaCG-GUUugCG-CGGuGG-CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 26659 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 23581 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 124910 0.66 0.809563
Target:  5'- uUGUCAGGCGgGCCuACaCGCGgGGCgAg -3'
miRNA:   3'- gACGGUUUGCgCGG-UG-GCGUgUCGgU- -5'
28858 3' -58.5 NC_006146.1 + 27647 0.66 0.809563
Target:  5'- -gGCCA---GCGUCACCGgGcCAGCCu -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCgU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 116884 0.66 0.809563
Target:  5'- cCU-CCGGAgGCGCCACCugguGC-CGGCCc -3'
miRNA:   3'- -GAcGGUUUgCGCGGUGG----CGuGUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.