miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 58542 0.65 0.832364
Target:  5'- -gGCCGgucAGCGUgGCgGCCuacauggagcccugGCACAGCCAg -3'
miRNA:   3'- gaCGGU---UUGCG-CGgUGG--------------CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 12264 0.66 0.791929
Target:  5'- -gGCCGGACGaugaGCC-CCGCuacaccuacugGCAGCUg -3'
miRNA:   3'- gaCGGUUUGCg---CGGuGGCG-----------UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 168419 0.66 0.791929
Target:  5'- -gGCCAGcUGCcuGCCcCCGC-CGGCCAc -3'
miRNA:   3'- gaCGGUUuGCG--CGGuGGCGuGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 138751 0.66 0.791929
Target:  5'- -aGCUGAGCG-GCCugC-CACGGCCc -3'
miRNA:   3'- gaCGGUUUGCgCGGugGcGUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 107470 0.66 0.791929
Target:  5'- -aGCUuGugGCGCaugGCCGCGCugagGGCCGc -3'
miRNA:   3'- gaCGGuUugCGCGg--UGGCGUG----UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 42295 0.66 0.791929
Target:  5'- -gGCCAGGuagcccaGCGCCAgaaaGUACAGCCGg -3'
miRNA:   3'- gaCGGUUUg------CGCGGUgg--CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 55668 0.66 0.791032
Target:  5'- -aGCCAGGCgGCGUUgaagGCCagcacggGCACGGCCGc -3'
miRNA:   3'- gaCGGUUUG-CGCGG----UGG-------CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 42627 0.66 0.791929
Target:  5'- gUGCU-GACGUGCCA-CGCcaGCGGCCGc -3'
miRNA:   3'- gACGGuUUGCGCGGUgGCG--UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 104193 0.66 0.791929
Target:  5'- -gGCCGucUGCGCCcccacgggGCCGCA-AGCCGa -3'
miRNA:   3'- gaCGGUuuGCGCGG--------UGGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 106634 0.66 0.791929
Target:  5'- uUGCCGca-GCGCCugC-UGCGGCCGg -3'
miRNA:   3'- gACGGUuugCGCGGugGcGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 116848 0.66 0.791929
Target:  5'- -gGCCAggUGgGCCcugaccaccGCCGaCAUGGCCGc -3'
miRNA:   3'- gaCGGUuuGCgCGG---------UGGC-GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 124910 0.66 0.809563
Target:  5'- uUGUCAGGCGgGCCuACaCGCGgGGCgAg -3'
miRNA:   3'- gACGGUUUGCgCGG-UG-GCGUgUCGgU- -5'
28858 3' -58.5 NC_006146.1 + 128221 0.66 0.826571
Target:  5'- uCUGCCAGccucagGCaGC-CCACCGCggGCgAGCCGc -3'
miRNA:   3'- -GACGGUU------UG-CGcGGUGGCG--UG-UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 13359 0.66 0.825736
Target:  5'- -gGCCAccuccucccucAcCGCGaCCACCGUggucugcGCGGCCAc -3'
miRNA:   3'- gaCGGU-----------UuGCGC-GGUGGCG-------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 14142 0.66 0.818149
Target:  5'- -aGCCAGguguACGCGCUgGCCGUGgAGCUg -3'
miRNA:   3'- gaCGGUU----UGCGCGG-UGGCGUgUCGGu -5'
28858 3' -58.5 NC_006146.1 + 10537 0.66 0.818149
Target:  5'- cCUGCCAAGgGCGCUGagaCGC-CAGUUc -3'
miRNA:   3'- -GACGGUUUgCGCGGUg--GCGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 58831 0.66 0.818149
Target:  5'- aCUG-CAAACGCcaccgaagaaaCCACCGCugAGCUg -3'
miRNA:   3'- -GACgGUUUGCGc----------GGUGGCGugUCGGu -5'
28858 3' -58.5 NC_006146.1 + 62664 0.66 0.813876
Target:  5'- gUGCCGAGCGaCGCCuccacgaACCagaugaagguuuaCACGGCCAc -3'
miRNA:   3'- gACGGUUUGC-GCGG-------UGGc------------GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 116884 0.66 0.809563
Target:  5'- cCU-CCGGAgGCGCCACCugguGC-CGGCCc -3'
miRNA:   3'- -GAcGGUUUgCGCGGUGG----CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 27647 0.66 0.809563
Target:  5'- -gGCCA---GCGUCACCGgGcCAGCCu -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCgU-GUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.