miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 46769 1.08 0.00205
Target:  5'- gCUGCCAAACGCGCCACCGCACAGCCAc -3'
miRNA:   3'- -GACGGUUUGCGCGGUGGCGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 51734 0.8 0.172883
Target:  5'- -cGCCGAGCaaaaGCCGCCGCAUAGCCc -3'
miRNA:   3'- gaCGGUUUGcg--CGGUGGCGUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 62329 0.78 0.220993
Target:  5'- -gGCCAGAgaCGCCGCCGC-CAGCCAa -3'
miRNA:   3'- gaCGGUUUgcGCGGUGGCGuGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 114110 0.77 0.237507
Target:  5'- -cGCCAGACG-GCCGCCGCGCucaccgaggaGGCCu -3'
miRNA:   3'- gaCGGUUUGCgCGGUGGCGUG----------UCGGu -5'
28858 3' -58.5 NC_006146.1 + 113528 0.77 0.243237
Target:  5'- -gGCCAGcccACcgGCGCCACCGCcGCAGCCu -3'
miRNA:   3'- gaCGGUU---UG--CGCGGUGGCG-UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 23737 0.75 0.306283
Target:  5'- -cGCCGGucUGCGCCGCCGCcgggucaacugccGCGGCCGa -3'
miRNA:   3'- gaCGGUUu-GCGCGGUGGCG-------------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 126169 0.75 0.30698
Target:  5'- -aGCCGccCGCgGCCACCGCAUcaGGCCGg -3'
miRNA:   3'- gaCGGUuuGCG-CGGUGGCGUG--UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 754 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 1685 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 2617 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 3549 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 118958 0.74 0.350997
Target:  5'- -cGCCAGuugGCGCGCagACCGCACcggGGCCGc -3'
miRNA:   3'- gaCGGUU---UGCGCGg-UGGCGUG---UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 66458 0.74 0.382742
Target:  5'- cCUGCCGAGgGCGCCGCCccuguccaccuuGUagguaugcgGCAGCCGg -3'
miRNA:   3'- -GACGGUUUgCGCGGUGG------------CG---------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 61490 0.74 0.382742
Target:  5'- -gGCCAAACGgGCCcugACCG-ACGGCCGu -3'
miRNA:   3'- gaCGGUUUGCgCGG---UGGCgUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 43406 0.73 0.399314
Target:  5'- gCUGCUugggaaacACGCGCCGCUGCAUGGCg- -3'
miRNA:   3'- -GACGGuu------UGCGCGGUGGCGUGUCGgu -5'
28858 3' -58.5 NC_006146.1 + 42437 0.73 0.407771
Target:  5'- -aGCUGGguGCGCGCCGCCaGCaugGCGGCCGg -3'
miRNA:   3'- gaCGGUU--UGCGCGGUGG-CG---UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 117385 0.73 0.407771
Target:  5'- -gGCCuucacACGCGCgGCC-CGCAGCCAg -3'
miRNA:   3'- gaCGGuu---UGCGCGgUGGcGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 54756 0.73 0.416339
Target:  5'- gCUGCCGAAgGagaccaGCCAgCGCAgGGCCGc -3'
miRNA:   3'- -GACGGUUUgCg-----CGGUgGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 109488 0.73 0.425016
Target:  5'- gUGCCc-GCGUugGCCACCGCAgcCAGCCu -3'
miRNA:   3'- gACGGuuUGCG--CGGUGGCGU--GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 128122 0.72 0.441795
Target:  5'- -gGCCGAggcggccACGCGCCGCCuGCACcugucGGCCc -3'
miRNA:   3'- gaCGGUU-------UGCGCGGUGG-CGUG-----UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.