Results 21 - 40 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28858 | 3' | -58.5 | NC_006146.1 | + | 4374 | 0.72 | 0.451679 |
Target: 5'- cCUGCCAagGACcCuGCCGCUugGCACAGCCGc -3' miRNA: 3'- -GACGGU--UUGcG-CGGUGG--CGUGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 42769 | 0.72 | 0.451679 |
Target: 5'- -gGCCGAcaggugcaggcgGCGCGUgGCCGCcuCGGCCAg -3' miRNA: 3'- gaCGGUU------------UGCGCGgUGGCGu-GUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 105834 | 0.72 | 0.460768 |
Target: 5'- cCUGCCc--CGCGCCGCCgaguagacGCAguGCCGc -3' miRNA: 3'- -GACGGuuuGCGCGGUGG--------CGUguCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 9459 | 0.72 | 0.460768 |
Target: 5'- -cGCCccACGCGCCuuggguucCCGCGgGGCCAc -3' miRNA: 3'- gaCGGuuUGCGCGGu-------GGCGUgUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 159539 | 0.72 | 0.479231 |
Target: 5'- cCUGCCuGACGCGCagCGCCuGCGCcaGGCCc -3' miRNA: 3'- -GACGGuUUGCGCG--GUGG-CGUG--UCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 70844 | 0.72 | 0.482967 |
Target: 5'- -gGCCAAGCGgGCCcggugagggaacacgACCGCGagaAGCCGc -3' miRNA: 3'- gaCGGUUUGCgCGG---------------UGGCGUg--UCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 67070 | 0.71 | 0.507582 |
Target: 5'- uCUGCCAGACGgGCCGagaaggggUCG-GCGGCCAc -3' miRNA: 3'- -GACGGUUUGCgCGGU--------GGCgUGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 48224 | 0.71 | 0.517191 |
Target: 5'- -gGCCuGGCGCGCCugggugagcGCCGCGCggagGGCCc -3' miRNA: 3'- gaCGGuUUGCGCGG---------UGGCGUG----UCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 124116 | 0.71 | 0.526872 |
Target: 5'- uUGCCcu-CGCGCCgGCCGgC-CAGCCAu -3' miRNA: 3'- gACGGuuuGCGCGG-UGGC-GuGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 45802 | 0.71 | 0.54643 |
Target: 5'- -gGCCGAGgaaG-GCCGCCGcCACGGCCGc -3' miRNA: 3'- gaCGGUUUg--CgCGGUGGC-GUGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 56595 | 0.71 | 0.54643 |
Target: 5'- -cGCCGAGCcCGCCGCCGguCuccucGCCGg -3' miRNA: 3'- gaCGGUUUGcGCGGUGGCguGu----CGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 71891 | 0.71 | 0.54643 |
Target: 5'- -gGCCGucACGCGgacccuCCugCGCGCGGCCu -3' miRNA: 3'- gaCGGUu-UGCGC------GGugGCGUGUCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 15169 | 0.7 | 0.556297 |
Target: 5'- -cGCCGuggaAGCGCugaagGCCgACUGCGCGGCCGc -3' miRNA: 3'- gaCGGU----UUGCG-----CGG-UGGCGUGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 72592 | 0.7 | 0.556297 |
Target: 5'- gUGCCAGACG-GCCACggaGCAC-GCCc -3' miRNA: 3'- gACGGUUUGCgCGGUGg--CGUGuCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 128194 | 0.7 | 0.556297 |
Target: 5'- -gGCCcagGGGgGCGCCGCgGCGCcgGGCCAg -3' miRNA: 3'- gaCGG---UUUgCGCGGUGgCGUG--UCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 62688 | 0.7 | 0.566214 |
Target: 5'- -cGCCAAGCGCGCggugCGUGCGGUCAa -3' miRNA: 3'- gaCGGUUUGCGCGgug-GCGUGUCGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 71685 | 0.7 | 0.576176 |
Target: 5'- -gGUCGGGCGCGCCGagGCcGCGGCCu -3' miRNA: 3'- gaCGGUUUGCGCGGUggCG-UGUCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 30205 | 0.7 | 0.586177 |
Target: 5'- -aGCCAGAgG-GCCGCUGCGCccGCCGg -3' miRNA: 3'- gaCGGUUUgCgCGGUGGCGUGu-CGGU- -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 42407 | 0.7 | 0.586177 |
Target: 5'- uCUGCUGAACGUGcCCGCCGUG-GGCCc -3' miRNA: 3'- -GACGGUUUGCGC-GGUGGCGUgUCGGu -5' |
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28858 | 3' | -58.5 | NC_006146.1 | + | 105415 | 0.7 | 0.596211 |
Target: 5'- -aGCCccACGCcgGCCAgcucagcacCCGCACAGCCc -3' miRNA: 3'- gaCGGuuUGCG--CGGU---------GGCGUGUCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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