miRNA display CGI


Results 21 - 40 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 116884 0.66 0.809563
Target:  5'- cCU-CCGGAgGCGCCACCugguGC-CGGCCc -3'
miRNA:   3'- -GAcGGUUUgCGCGGUGG----CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 151393 0.66 0.808696
Target:  5'- gCUGCUgcaggcggggGAugGCGCgGCgGCAgcuguacCAGCCAa -3'
miRNA:   3'- -GACGG----------UUugCGCGgUGgCGU-------GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 62021 0.66 0.80082
Target:  5'- -gGCCGcGGCGCucgGCCucuGCCGCAuucCAGCCGu -3'
miRNA:   3'- gaCGGU-UUGCG---CGG---UGGCGU---GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 54786 0.66 0.80082
Target:  5'- -nGCCAgggAGCGCGCC-UUGgGCAGCUc -3'
miRNA:   3'- gaCGGU---UUGCGCGGuGGCgUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 129008 0.66 0.795503
Target:  5'- -cGCCAggcaGACGCGacucagguccggggCACgGCGCAGCCc -3'
miRNA:   3'- gaCGGU----UUGCGCg-------------GUGgCGUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 104193 0.66 0.791929
Target:  5'- -gGCCGucUGCGCCcccacgggGCCGCA-AGCCGa -3'
miRNA:   3'- gaCGGUuuGCGCGG--------UGGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 116848 0.66 0.791929
Target:  5'- -gGCCAggUGgGCCcugaccaccGCCGaCAUGGCCGc -3'
miRNA:   3'- gaCGGUuuGCgCGG---------UGGC-GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 106634 0.66 0.791929
Target:  5'- uUGCCGca-GCGCCugC-UGCGGCCGg -3'
miRNA:   3'- gACGGUuugCGCGGugGcGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 12264 0.66 0.791929
Target:  5'- -gGCCGGACGaugaGCC-CCGCuacaccuacugGCAGCUg -3'
miRNA:   3'- gaCGGUUUGCg---CGGuGGCG-----------UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 107470 0.66 0.791929
Target:  5'- -aGCUuGugGCGCaugGCCGCGCugagGGCCGc -3'
miRNA:   3'- gaCGGuUugCGCGg--UGGCGUG----UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 168419 0.66 0.791929
Target:  5'- -gGCCAGcUGCcuGCCcCCGC-CGGCCAc -3'
miRNA:   3'- gaCGGUUuGCG--CGGuGGCGuGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 138751 0.66 0.791929
Target:  5'- -aGCUGAGCG-GCCugC-CACGGCCc -3'
miRNA:   3'- gaCGGUUUGCgCGGugGcGUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 42295 0.66 0.791929
Target:  5'- -gGCCAGGuagcccaGCGCCAgaaaGUACAGCCGg -3'
miRNA:   3'- gaCGGUUUg------CGCGGUgg--CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 156691 0.66 0.791929
Target:  5'- -gGCCcgcguuGCGCGCCACCGC-CuccCCGu -3'
miRNA:   3'- gaCGGuu----UGCGCGGUGGCGuGuc-GGU- -5'
28858 3' -58.5 NC_006146.1 + 42627 0.66 0.791929
Target:  5'- gUGCU-GACGUGCCA-CGCcaGCGGCCGc -3'
miRNA:   3'- gACGGuUUGCGCGGUgGCG--UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 55668 0.66 0.791032
Target:  5'- -aGCCAGGCgGCGUUgaagGCCagcacggGCACGGCCGc -3'
miRNA:   3'- gaCGGUUUG-CGCGG----UGG-------CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 170161 0.67 0.786527
Target:  5'- gCUGCCAGAUG-GCaucgacaacgaggagCACgGCACAGgCCAa -3'
miRNA:   3'- -GACGGUUUGCgCG---------------GUGgCGUGUC-GGU- -5'
28858 3' -58.5 NC_006146.1 + 100348 0.67 0.786527
Target:  5'- -gGCCuuauucucagacucaAGACGaGCCAgCCGgGCAGCCAu -3'
miRNA:   3'- gaCGG---------------UUUGCgCGGU-GGCgUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 59866 0.67 0.782898
Target:  5'- -aGCCuguuuuuGCGCaggaGCaCGCCGCGCgGGCCAg -3'
miRNA:   3'- gaCGGuu-----UGCG----CG-GUGGCGUG-UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 100736 0.67 0.782898
Target:  5'- -gGCCu--CGCcgGCCACCaGCGCcccGGCCAg -3'
miRNA:   3'- gaCGGuuuGCG--CGGUGG-CGUG---UCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.