miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 118997 0.67 0.782898
Target:  5'- gUGCCucgGAgGCccCCGCCGaCGCAGCCu -3'
miRNA:   3'- gACGGu--UUgCGc-GGUGGC-GUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 100736 0.67 0.782898
Target:  5'- -gGCCu--CGCcgGCCACCaGCGCcccGGCCAg -3'
miRNA:   3'- gaCGGuuuGCG--CGGUGG-CGUG---UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 34199 0.67 0.780162
Target:  5'- gUGCCAGGCagggaccucGCGCCGCC-CGCuucauggggggggaGGCCGc -3'
miRNA:   3'- gACGGUUUG---------CGCGGUGGcGUG--------------UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 138029 0.67 0.780162
Target:  5'- gUGCCAGGCagggaccucGCGCCGCC-CGCuucauggggggggaGGCCGc -3'
miRNA:   3'- gACGGUUUG---------CGCGGUGGcGUG--------------UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 73643 0.67 0.773735
Target:  5'- -cGCCAGugGCacaaCACCGagcCAGCCAc -3'
miRNA:   3'- gaCGGUUugCGcg--GUGGCgu-GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 47492 0.67 0.773735
Target:  5'- -cGCCGAucuggucuuCG-GCCGCCGCGgccaguucCAGCCAg -3'
miRNA:   3'- gaCGGUUu--------GCgCGGUGGCGU--------GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 96977 0.67 0.773735
Target:  5'- cCUGUCGGACa-GCCAUgGCAUaAGCCAg -3'
miRNA:   3'- -GACGGUUUGcgCGGUGgCGUG-UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 116117 0.67 0.773735
Target:  5'- gCUGCCcaAGGCGCGCUcCCugGCGGCCc -3'
miRNA:   3'- -GACGG--UUUGCGCGGuGGcgUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 115701 0.67 0.773735
Target:  5'- -gGCCGAcaggagACGCucgcCCGCCGCggccGCAGCCu -3'
miRNA:   3'- gaCGGUU------UGCGc---GGUGGCG----UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 154707 0.67 0.764449
Target:  5'- -cGcCCAGAUGCaGcCCACCaGgGCGGCCAg -3'
miRNA:   3'- gaC-GGUUUGCG-C-GGUGG-CgUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 306 0.67 0.764449
Target:  5'- -gGCCcGGCGCGCuCGCCacGCcCAGCUg -3'
miRNA:   3'- gaCGGuUUGCGCG-GUGG--CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 72558 0.67 0.764449
Target:  5'- -cGCCAAugGgCGCCGgCGUGguGCUg -3'
miRNA:   3'- gaCGGUUugC-GCGGUgGCGUguCGGu -5'
28858 3' -58.5 NC_006146.1 + 124324 0.67 0.764449
Target:  5'- -gGCCAuGACGCuGCUGgCGCAC-GCCAc -3'
miRNA:   3'- gaCGGU-UUGCG-CGGUgGCGUGuCGGU- -5'
28858 3' -58.5 NC_006146.1 + 21237 0.67 0.764449
Target:  5'- cCUGCaaguucgugCAGGCGCGCUGCCgGCGCGuGCUc -3'
miRNA:   3'- -GACG---------GUUUGCGCGGUGG-CGUGU-CGGu -5'
28858 3' -58.5 NC_006146.1 + 78647 0.67 0.755049
Target:  5'- -gGCCGGGCcCGCCcCCcaGCAgCAGCCAc -3'
miRNA:   3'- gaCGGUUUGcGCGGuGG--CGU-GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 89966 0.67 0.755049
Target:  5'- uUGUCAGAUGgGCC-UgGCugGGCCGg -3'
miRNA:   3'- gACGGUUUGCgCGGuGgCGugUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 50330 0.67 0.755049
Target:  5'- -gGUCAAACuuGCCAuCCGCGgccuCGGCCAg -3'
miRNA:   3'- gaCGGUUUGcgCGGU-GGCGU----GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 80959 0.67 0.755049
Target:  5'- aCUGCUuccuccaGUGCCACCuuuGCAGCCAa -3'
miRNA:   3'- -GACGGuuug---CGCGGUGGcg-UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 39828 0.67 0.755049
Target:  5'- -gGCCcGGCG-GCCucgGCCGCACAGUgGg -3'
miRNA:   3'- gaCGGuUUGCgCGG---UGGCGUGUCGgU- -5'
28858 3' -58.5 NC_006146.1 + 57881 0.67 0.755049
Target:  5'- cCUGCCGGGCGUcugcuCCAUCGCcucaaGGCCGa -3'
miRNA:   3'- -GACGGUUUGCGc----GGUGGCGug---UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.