miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 306 0.67 0.764449
Target:  5'- -gGCCcGGCGCGCuCGCCacGCcCAGCUg -3'
miRNA:   3'- gaCGGuUUGCGCG-GUGG--CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 587 0.68 0.68679
Target:  5'- -gGCCGGGgGCGCgGCCcgGCGcCAGCCc -3'
miRNA:   3'- gaCGGUUUgCGCGgUGG--CGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 754 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 905 0.69 0.623409
Target:  5'- -gGCC--GCGCGCCGCCccccgggaccccggGCGCGcGCCGg -3'
miRNA:   3'- gaCGGuuUGCGCGGUGG--------------CGUGU-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 1237 0.69 0.66676
Target:  5'- -gGCCAcGCGCGcCCGCCacGCcCAGCUg -3'
miRNA:   3'- gaCGGUuUGCGC-GGUGG--CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 1518 0.68 0.68679
Target:  5'- -gGCCGGGgGCGCgGCCcgGCGcCAGCCc -3'
miRNA:   3'- gaCGGUUUgCGCGgUGG--CGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 1685 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 1837 0.69 0.623409
Target:  5'- -gGCC--GCGCGCCGCCccccgggaccccggGCGCGcGCCGg -3'
miRNA:   3'- gaCGGuuUGCGCGGUGG--------------CGUGU-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 2169 0.69 0.66676
Target:  5'- -gGCCAcGCGCGcCCGCCacGCcCAGCUg -3'
miRNA:   3'- gaCGGUuUGCGC-GGUGG--CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 2450 0.68 0.68679
Target:  5'- -gGCCGGGgGCGCgGCCcgGCGcCAGCCc -3'
miRNA:   3'- gaCGGUUUgCGCGgUGG--CGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 2617 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 2769 0.69 0.623409
Target:  5'- -gGCC--GCGCGCCGCCccccgggaccccggGCGCGcGCCGg -3'
miRNA:   3'- gaCGGuuUGCGCGGUGG--------------CGUGU-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 3101 0.69 0.66676
Target:  5'- -gGCCAcGCGCGcCCGCCacGCcCAGCUg -3'
miRNA:   3'- gaCGGUuUGCGC-GGUGG--CGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 3382 0.68 0.68679
Target:  5'- -gGCCGGGgGCGCgGCCcgGCGcCAGCCc -3'
miRNA:   3'- gaCGGUUUgCGCGgUGG--CGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 3549 0.75 0.328444
Target:  5'- -gGCCG---GCGCCGCCGCgcguGCAGCCGa -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCG----UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 3701 0.69 0.623409
Target:  5'- -gGCC--GCGCGCCGCCccccgggaccccggGCGCGcGCCGg -3'
miRNA:   3'- gaCGGuuUGCGCGGUGG--------------CGUGU-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 3900 0.68 0.696743
Target:  5'- -aGCCAccACGUGCaccuucaACCGCGCccAGCCAc -3'
miRNA:   3'- gaCGGUu-UGCGCGg------UGGCGUG--UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 4374 0.72 0.451679
Target:  5'- cCUGCCAagGACcCuGCCGCUugGCACAGCCGc -3'
miRNA:   3'- -GACGGU--UUGcG-CGGUGG--CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 5112 0.68 0.706643
Target:  5'- -aGCCGGcCGUGCCACCGU--GGCUc -3'
miRNA:   3'- gaCGGUUuGCGCGGUGGCGugUCGGu -5'
28858 3' -58.5 NC_006146.1 + 9459 0.72 0.460768
Target:  5'- -cGCCccACGCGCCuuggguucCCGCGgGGCCAc -3'
miRNA:   3'- gaCGGuuUGCGCGGu-------GGCGUgUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.