miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 10537 0.66 0.818149
Target:  5'- cCUGCCAAGgGCGCUGagaCGC-CAGUUc -3'
miRNA:   3'- -GACGGUUUgCGCGGUg--GCGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 12264 0.66 0.791929
Target:  5'- -gGCCGGACGaugaGCC-CCGCuacaccuacugGCAGCUg -3'
miRNA:   3'- gaCGGUUUGCg---CGGuGGCG-----------UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 13359 0.66 0.825736
Target:  5'- -gGCCAccuccucccucAcCGCGaCCACCGUggucugcGCGGCCAc -3'
miRNA:   3'- gaCGGU-----------UuGCGC-GGUGGCG-------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 13559 0.67 0.755049
Target:  5'- -cGCCGGGCGCcgGgCugCGCAagcaGGCCGg -3'
miRNA:   3'- gaCGGUUUGCG--CgGugGCGUg---UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 14142 0.66 0.818149
Target:  5'- -aGCCAGguguACGCGCUgGCCGUGgAGCUg -3'
miRNA:   3'- gaCGGUU----UGCGCGG-UGGCGUgUCGGu -5'
28858 3' -58.5 NC_006146.1 + 14347 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 15169 0.7 0.556297
Target:  5'- -cGCCGuggaAGCGCugaagGCCgACUGCGCGGCCGc -3'
miRNA:   3'- gaCGGU----UUGCG-----CGG-UGGCGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 15332 0.69 0.64662
Target:  5'- gUGCCccuGGCggGCGCC-CCGCGCgAGCCc -3'
miRNA:   3'- gACGGu--UUG--CGCGGuGGCGUG-UCGGu -5'
28858 3' -58.5 NC_006146.1 + 16233 0.69 0.63653
Target:  5'- -aGCC-AGCGCcccccGCCACCacgGUGCAGCCGg -3'
miRNA:   3'- gaCGGuUUGCG-----CGGUGG---CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 17425 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 18426 0.68 0.726251
Target:  5'- -aGgCGcACGCGCCAgaugUCGCAgCAGCCGg -3'
miRNA:   3'- gaCgGUuUGCGCGGU----GGCGU-GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 19502 0.7 0.60627
Target:  5'- gCUGCCGc-CGCGCCAucccCCGCcuGCAGCa- -3'
miRNA:   3'- -GACGGUuuGCGCGGU----GGCG--UGUCGgu -5'
28858 3' -58.5 NC_006146.1 + 20503 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 20699 0.67 0.745543
Target:  5'- -gGCCAAGCGCaagGCCauuaagaaGCUGCugGCGGCCu -3'
miRNA:   3'- gaCGGUUUGCG---CGG--------UGGCG--UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 21237 0.67 0.764449
Target:  5'- cCUGCaaguucgugCAGGCGCGCUGCCgGCGCGuGCUc -3'
miRNA:   3'- -GACG---------GUUUGCGCGGUGG-CGUGU-CGGu -5'
28858 3' -58.5 NC_006146.1 + 23581 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 23737 0.75 0.306283
Target:  5'- -cGCCGGucUGCGCCGCCGCcgggucaacugccGCGGCCGa -3'
miRNA:   3'- gaCGGUUu-GCGCGGUGGCG-------------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 23784 0.68 0.716482
Target:  5'- -gGCCu-GCGCGUCuggggcCCGCugAGCCc -3'
miRNA:   3'- gaCGGuuUGCGCGGu-----GGCGugUCGGu -5'
28858 3' -58.5 NC_006146.1 + 26659 0.66 0.809563
Target:  5'- -gGCCAuGCGCGCCcaguuggcggGCCuGUcagACAGCCc -3'
miRNA:   3'- gaCGGUuUGCGCGG----------UGG-CG---UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 27647 0.66 0.809563
Target:  5'- -gGCCA---GCGUCACCGgGcCAGCCu -3'
miRNA:   3'- gaCGGUuugCGCGGUGGCgU-GUCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.