miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 62329 0.78 0.220993
Target:  5'- -gGCCAGAgaCGCCGCCGC-CAGCCAa -3'
miRNA:   3'- gaCGGUUUgcGCGGUGGCGuGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 53783 0.7 0.596211
Target:  5'- -cGCCGGACGaggGCCucggcCCGCGCGGCg- -3'
miRNA:   3'- gaCGGUUUGCg--CGGu----GGCGUGUCGgu -5'
28858 3' -58.5 NC_006146.1 + 78827 0.7 0.60627
Target:  5'- -gGCCGGGC-CGCCccCCGCAgCAGCCc -3'
miRNA:   3'- gaCGGUUUGcGCGGu-GGCGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 58542 0.65 0.832364
Target:  5'- -gGCCGgucAGCGUgGCgGCCuacauggagcccugGCACAGCCAg -3'
miRNA:   3'- gaCGGU---UUGCG-CGgUGG--------------CGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 9459 0.72 0.460768
Target:  5'- -cGCCccACGCGCCuuggguucCCGCGgGGCCAc -3'
miRNA:   3'- gaCGGuuUGCGCGGu-------GGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 105834 0.72 0.460768
Target:  5'- cCUGCCc--CGCGCCGCCgaguagacGCAguGCCGc -3'
miRNA:   3'- -GACGGuuuGCGCGGUGG--------CGUguCGGU- -5'
28858 3' -58.5 NC_006146.1 + 70844 0.72 0.482967
Target:  5'- -gGCCAAGCGgGCCcggugagggaacacgACCGCGagaAGCCGc -3'
miRNA:   3'- gaCGGUUUGCgCGG---------------UGGCGUg--UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 67070 0.71 0.507582
Target:  5'- uCUGCCAGACGgGCCGagaaggggUCG-GCGGCCAc -3'
miRNA:   3'- -GACGGUUUGCgCGGU--------GGCgUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 56595 0.71 0.54643
Target:  5'- -cGCCGAGCcCGCCGCCGguCuccucGCCGg -3'
miRNA:   3'- gaCGGUUUGcGCGGUGGCguGu----CGGU- -5'
28858 3' -58.5 NC_006146.1 + 154642 0.7 0.596211
Target:  5'- -gGUCuuuuGGCGCGCUGCCGC-CGGCUg -3'
miRNA:   3'- gaCGGu---UUGCGCGGUGGCGuGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 62688 0.7 0.566214
Target:  5'- -cGCCAAGCGCGCggugCGUGCGGUCAa -3'
miRNA:   3'- gaCGGUUUGCGCGgug-GCGUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 45802 0.71 0.54643
Target:  5'- -gGCCGAGgaaG-GCCGCCGcCACGGCCGc -3'
miRNA:   3'- gaCGGUUUg--CgCGGUGGC-GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 66458 0.74 0.382742
Target:  5'- cCUGCCGAGgGCGCCGCCccuguccaccuuGUagguaugcgGCAGCCGg -3'
miRNA:   3'- -GACGGUUUgCGCGGUGG------------CG---------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 30205 0.7 0.586177
Target:  5'- -aGCCAGAgG-GCCGCUGCGCccGCCGg -3'
miRNA:   3'- gaCGGUUUgCgCGGUGGCGUGu-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 54756 0.73 0.416339
Target:  5'- gCUGCCGAAgGagaccaGCCAgCGCAgGGCCGc -3'
miRNA:   3'- -GACGGUUUgCg-----CGGUgGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 48224 0.71 0.517191
Target:  5'- -gGCCuGGCGCGCCugggugagcGCCGCGCggagGGCCc -3'
miRNA:   3'- gaCGGuUUGCGCGG---------UGGCGUG----UCGGu -5'
28858 3' -58.5 NC_006146.1 + 42407 0.7 0.586177
Target:  5'- uCUGCUGAACGUGcCCGCCGUG-GGCCc -3'
miRNA:   3'- -GACGGUUUGCGC-GGUGGCGUgUCGGu -5'
28858 3' -58.5 NC_006146.1 + 156764 0.7 0.60325
Target:  5'- -gGCCAGcGCGUacaccuggcuguagGCCGCCGCcaGCAGCCc -3'
miRNA:   3'- gaCGGUU-UGCG--------------CGGUGGCG--UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 128122 0.72 0.441795
Target:  5'- -gGCCGAggcggccACGCGCCGCCuGCACcugucGGCCc -3'
miRNA:   3'- gaCGGUU-------UGCGCGGUGG-CGUG-----UCGGu -5'
28858 3' -58.5 NC_006146.1 + 159539 0.72 0.479231
Target:  5'- cCUGCCuGACGCGCagCGCCuGCGCcaGGCCc -3'
miRNA:   3'- -GACGGuUUGCGCG--GUGG-CGUG--UCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.