miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 3' -58.5 NC_006146.1 + 137933 0.69 0.620382
Target:  5'- -aGCCGcgacccAGCGCGCC-CCGUucacgggggaggaucGCGGCCGg -3'
miRNA:   3'- gaCGGU------UUGCGCGGuGGCG---------------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 78827 0.7 0.60627
Target:  5'- -gGCCGGGC-CGCCccCCGCAgCAGCCc -3'
miRNA:   3'- gaCGGUUUGcGCGGu-GGCGU-GUCGGu -5'
28858 3' -58.5 NC_006146.1 + 45802 0.71 0.54643
Target:  5'- -gGCCGAGgaaG-GCCGCCGcCACGGCCGc -3'
miRNA:   3'- gaCGGUUUg--CgCGGUGGC-GUGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 128122 0.72 0.441795
Target:  5'- -gGCCGAggcggccACGCGCCGCCuGCACcugucGGCCc -3'
miRNA:   3'- gaCGGUU-------UGCGCGGUGG-CGUG-----UCGGu -5'
28858 3' -58.5 NC_006146.1 + 79209 0.68 0.696743
Target:  5'- -aGCCAAAacCGaUGCCACCGUAgAGUCu -3'
miRNA:   3'- gaCGGUUU--GC-GCGGUGGCGUgUCGGu -5'
28858 3' -58.5 NC_006146.1 + 143994 0.68 0.676792
Target:  5'- uUGUUAGGCGUGUCGUCGUaaGCAGCCGg -3'
miRNA:   3'- gACGGUUUGCGCGGUGGCG--UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 53783 0.7 0.596211
Target:  5'- -cGCCGGACGaggGCCucggcCCGCGCGGCg- -3'
miRNA:   3'- gaCGGUUUGCg--CGGu----GGCGUGUCGgu -5'
28858 3' -58.5 NC_006146.1 + 54756 0.73 0.416339
Target:  5'- gCUGCCGAAgGagaccaGCCAgCGCAgGGCCGc -3'
miRNA:   3'- -GACGGUUUgCg-----CGGUgGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 113815 0.69 0.6567
Target:  5'- -gGCCAgGACGCGCCGCuCGUggACuacGCCGu -3'
miRNA:   3'- gaCGGU-UUGCGCGGUG-GCG--UGu--CGGU- -5'
28858 3' -58.5 NC_006146.1 + 66458 0.74 0.382742
Target:  5'- cCUGCCGAGgGCGCCGCCccuguccaccuuGUagguaugcgGCAGCCGg -3'
miRNA:   3'- -GACGGUUUgCGCGGUGG------------CG---------UGUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 156764 0.7 0.60325
Target:  5'- -gGCCAGcGCGUacaccuggcuguagGCCGCCGCcaGCAGCCc -3'
miRNA:   3'- gaCGGUU-UGCG--------------CGGUGGCG--UGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 52843 0.69 0.626437
Target:  5'- -gGCCGAGC-CGCCGCCGCccccGCCc -3'
miRNA:   3'- gaCGGUUUGcGCGGUGGCGugu-CGGu -5'
28858 3' -58.5 NC_006146.1 + 30205 0.7 0.586177
Target:  5'- -aGCCAGAgG-GCCGCUGCGCccGCCGg -3'
miRNA:   3'- gaCGGUUUgCgCGGUGGCGUGu-CGGU- -5'
28858 3' -58.5 NC_006146.1 + 56595 0.71 0.54643
Target:  5'- -cGCCGAGCcCGCCGCCGguCuccucGCCGg -3'
miRNA:   3'- gaCGGUUUGcGCGGUGGCguGu----CGGU- -5'
28858 3' -58.5 NC_006146.1 + 70844 0.72 0.482967
Target:  5'- -gGCCAAGCGgGCCcggugagggaacacgACCGCGagaAGCCGc -3'
miRNA:   3'- gaCGGUUUGCgCGG---------------UGGCGUg--UCGGU- -5'
28858 3' -58.5 NC_006146.1 + 9459 0.72 0.460768
Target:  5'- -cGCCccACGCGCCuuggguucCCGCGgGGCCAc -3'
miRNA:   3'- gaCGGuuUGCGCGGu-------GGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 167186 0.68 0.713537
Target:  5'- -gGCCGGcGCGCGCCcggggucccgggggGCggCGCGCGGCCu -3'
miRNA:   3'- gaCGGUU-UGCGCGG--------------UG--GCGUGUCGGu -5'
28858 3' -58.5 NC_006146.1 + 147559 0.68 0.696743
Target:  5'- -cGCCAGGCGCugagGUCGguCUGCAgGGCCAu -3'
miRNA:   3'- gaCGGUUUGCG----CGGU--GGCGUgUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 169218 0.68 0.68679
Target:  5'- -gGCUgcACGCGCgGCgGCGcCGGCCGg -3'
miRNA:   3'- gaCGGuuUGCGCGgUGgCGU-GUCGGU- -5'
28858 3' -58.5 NC_006146.1 + 156606 0.68 0.676792
Target:  5'- -cGCCAgcuccagggacAGgGCGCUGCaCGCGCGGUCAu -3'
miRNA:   3'- gaCGGU-----------UUgCGCGGUG-GCGUGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.