miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28858 5' -54.6 NC_006146.1 + 91305 0.66 0.93725
Target:  5'- cACCGG-UGCGCUGUaCAUugucucCUGGCUc-- -3'
miRNA:   3'- -UGGUCgACGCGACA-GUA------GACCGAaug -5'
28858 5' -54.6 NC_006146.1 + 47286 0.66 0.932181
Target:  5'- -aCGGCUGCGUggaccUCcgCUGGCUgGCc -3'
miRNA:   3'- ugGUCGACGCGac---AGuaGACCGAaUG- -5'
28858 5' -54.6 NC_006146.1 + 150144 0.67 0.915473
Target:  5'- gGCCAGCUGCuGCUuguccaggaugGUCuUUUGGCg--- -3'
miRNA:   3'- -UGGUCGACG-CGA-----------CAGuAGACCGaaug -5'
28858 5' -54.6 NC_006146.1 + 53494 0.67 0.909405
Target:  5'- gGCCGGggGUGCgGUCuggcUCUGGC-UGCg -3'
miRNA:   3'- -UGGUCgaCGCGaCAGu---AGACCGaAUG- -5'
28858 5' -54.6 NC_006146.1 + 80167 0.67 0.901148
Target:  5'- uACCGGUUGUGUucguccgcucagccUGaCAUCUGGCUa-- -3'
miRNA:   3'- -UGGUCGACGCG--------------ACaGUAGACCGAaug -5'
28858 5' -54.6 NC_006146.1 + 72568 0.67 0.896531
Target:  5'- cGCCGGCgugGUGCUGg-----GGCUUGCc -3'
miRNA:   3'- -UGGUCGa--CGCGACaguagaCCGAAUG- -5'
28858 5' -54.6 NC_006146.1 + 73495 0.67 0.882693
Target:  5'- uCCAGCaccagGCGCgggGUCAcgCgcaGGCUUACu -3'
miRNA:   3'- uGGUCGa----CGCGa--CAGUa-Ga--CCGAAUG- -5'
28858 5' -54.6 NC_006146.1 + 80409 0.67 0.882693
Target:  5'- ---cGCUGCGCca-CAUCUGGCUUcACa -3'
miRNA:   3'- ugguCGACGCGacaGUAGACCGAA-UG- -5'
28858 5' -54.6 NC_006146.1 + 93986 0.69 0.791315
Target:  5'- cCCGGCUGCaGCcccgcgGUCAccUCUGGCUcccacgUGCg -3'
miRNA:   3'- uGGUCGACG-CGa-----CAGU--AGACCGA------AUG- -5'
28858 5' -54.6 NC_006146.1 + 152469 0.77 0.39463
Target:  5'- cACCGGCUGCuGCga-CAUCUGGCgcgUGCg -3'
miRNA:   3'- -UGGUCGACG-CGacaGUAGACCGa--AUG- -5'
28858 5' -54.6 NC_006146.1 + 46803 1.1 0.002986
Target:  5'- uACCAGCUGCGCUGUCAUCUGGCUUACg -3'
miRNA:   3'- -UGGUCGACGCGACAGUAGACCGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.