Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28858 | 5' | -54.6 | NC_006146.1 | + | 46803 | 1.1 | 0.002986 |
Target: 5'- uACCAGCUGCGCUGUCAUCUGGCUUACg -3' miRNA: 3'- -UGGUCGACGCGACAGUAGACCGAAUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 152469 | 0.77 | 0.39463 |
Target: 5'- cACCGGCUGCuGCga-CAUCUGGCgcgUGCg -3' miRNA: 3'- -UGGUCGACG-CGacaGUAGACCGa--AUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 93986 | 0.69 | 0.791315 |
Target: 5'- cCCGGCUGCaGCcccgcgGUCAccUCUGGCUcccacgUGCg -3' miRNA: 3'- uGGUCGACG-CGa-----CAGU--AGACCGA------AUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 73495 | 0.67 | 0.882693 |
Target: 5'- uCCAGCaccagGCGCgggGUCAcgCgcaGGCUUACu -3' miRNA: 3'- uGGUCGa----CGCGa--CAGUa-Ga--CCGAAUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 80409 | 0.67 | 0.882693 |
Target: 5'- ---cGCUGCGCca-CAUCUGGCUUcACa -3' miRNA: 3'- ugguCGACGCGacaGUAGACCGAA-UG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 72568 | 0.67 | 0.896531 |
Target: 5'- cGCCGGCgugGUGCUGg-----GGCUUGCc -3' miRNA: 3'- -UGGUCGa--CGCGACaguagaCCGAAUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 80167 | 0.67 | 0.901148 |
Target: 5'- uACCGGUUGUGUucguccgcucagccUGaCAUCUGGCUa-- -3' miRNA: 3'- -UGGUCGACGCG--------------ACaGUAGACCGAaug -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 53494 | 0.67 | 0.909405 |
Target: 5'- gGCCGGggGUGCgGUCuggcUCUGGC-UGCg -3' miRNA: 3'- -UGGUCgaCGCGaCAGu---AGACCGaAUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 150144 | 0.67 | 0.915473 |
Target: 5'- gGCCAGCUGCuGCUuguccaggaugGUCuUUUGGCg--- -3' miRNA: 3'- -UGGUCGACG-CGA-----------CAGuAGACCGaaug -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 47286 | 0.66 | 0.932181 |
Target: 5'- -aCGGCUGCGUggaccUCcgCUGGCUgGCc -3' miRNA: 3'- ugGUCGACGCGac---AGuaGACCGAaUG- -5' |
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28858 | 5' | -54.6 | NC_006146.1 | + | 91305 | 0.66 | 0.93725 |
Target: 5'- cACCGG-UGCGCUGUaCAUugucucCUGGCUc-- -3' miRNA: 3'- -UGGUCgACGCGACA-GUA------GACCGAaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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