miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 3' -50.2 NC_006146.1 + 160318 0.66 0.996239
Target:  5'- --aGAUUUCAggaAGAcgcucagGCUGGCCACg -3'
miRNA:   3'- ucgCUGAAGUaagUCUa------UGACCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 130299 0.66 0.996239
Target:  5'- cAGCGGCggCAUgCGGAgguucGGCCGCc -3'
miRNA:   3'- -UCGCUGaaGUAaGUCUauga-CCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 12031 0.66 0.995586
Target:  5'- cGGCaGCUaCGUggCGGGUGC-GGCCACc -3'
miRNA:   3'- -UCGcUGAaGUAa-GUCUAUGaCCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 76711 0.66 0.995586
Target:  5'- cGGCGACUUCAU--GGAcACgcucgaGGCCGa -3'
miRNA:   3'- -UCGCUGAAGUAagUCUaUGa-----CCGGUg -5'
28859 3' -50.2 NC_006146.1 + 10392 0.66 0.995586
Target:  5'- cGCGGC-UCAggguGGUGCUGuGCUACa -3'
miRNA:   3'- uCGCUGaAGUaaguCUAUGAC-CGGUG- -5'
28859 3' -50.2 NC_006146.1 + 156687 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 141298 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 144376 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 150532 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 153610 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 147454 0.66 0.994843
Target:  5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3'
miRNA:   3'- -UCGCUGAagua-AGUCuaUGACCGGug -5'
28859 3' -50.2 NC_006146.1 + 103804 0.66 0.994003
Target:  5'- aGGCGAUacu-UUguGAUGgUGGCCGCc -3'
miRNA:   3'- -UCGCUGaaguAAguCUAUgACCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 78327 0.66 0.994003
Target:  5'- uGgGGCaa-AUUCAGAUACaggcacacuUGGCCACc -3'
miRNA:   3'- uCgCUGaagUAAGUCUAUG---------ACCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 51702 0.67 0.993055
Target:  5'- uGGCGGCUcccggccgucauUCAUUCGGAUAac-GCCGa -3'
miRNA:   3'- -UCGCUGA------------AGUAAGUCUAUgacCGGUg -5'
28859 3' -50.2 NC_006146.1 + 66204 0.67 0.991991
Target:  5'- uGUGACaUgAUUCAGAUuggaaaGGCCACg -3'
miRNA:   3'- uCGCUGaAgUAAGUCUAuga---CCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 77924 0.67 0.991991
Target:  5'- gGGCGGCcUCg--CAGGUGCcgggGGUCGCu -3'
miRNA:   3'- -UCGCUGaAGuaaGUCUAUGa---CCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 4206 0.67 0.991991
Target:  5'- -cCGGCUUCAUgacGGUGgUGGUCACg -3'
miRNA:   3'- ucGCUGAAGUAaguCUAUgACCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 55427 0.67 0.991648
Target:  5'- cGCGGCcUCGUUgAGAcccgccgacagcagUACcgUGGCCACc -3'
miRNA:   3'- uCGCUGaAGUAAgUCU--------------AUG--ACCGGUG- -5'
28859 3' -50.2 NC_006146.1 + 46722 0.68 0.984602
Target:  5'- cGGCGGCUccgaggCGggCGGAggccacGCUGGCCAg -3'
miRNA:   3'- -UCGCUGAa-----GUaaGUCUa-----UGACCGGUg -5'
28859 3' -50.2 NC_006146.1 + 54041 0.68 0.982644
Target:  5'- gGGCGGCcaugUCGgcgguggUCAGGgcccacCUGGCCGCc -3'
miRNA:   3'- -UCGCUGa---AGUa------AGUCUau----GACCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.