Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28859 | 3' | -50.2 | NC_006146.1 | + | 147454 | 0.66 | 0.994843 |
Target: 5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3' miRNA: 3'- -UCGCUGAagua-AGUCuaUGACCGGug -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 144376 | 0.66 | 0.994843 |
Target: 5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3' miRNA: 3'- -UCGCUGAagua-AGUCuaUGACCGGug -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 141298 | 0.66 | 0.994843 |
Target: 5'- gGGCGGCUgggggUCGG--GCUGGCCu- -3' miRNA: 3'- -UCGCUGAagua-AGUCuaUGACCGGug -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 103804 | 0.66 | 0.994003 |
Target: 5'- aGGCGAUacu-UUguGAUGgUGGCCGCc -3' miRNA: 3'- -UCGCUGaaguAAguCUAUgACCGGUG- -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 51702 | 0.67 | 0.993055 |
Target: 5'- uGGCGGCUcccggccgucauUCAUUCGGAUAac-GCCGa -3' miRNA: 3'- -UCGCUGA------------AGUAAGUCUAUgacCGGUg -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 77924 | 0.67 | 0.991991 |
Target: 5'- gGGCGGCcUCg--CAGGUGCcgggGGUCGCu -3' miRNA: 3'- -UCGCUGaAGuaaGUCUAUGa---CCGGUG- -5' |
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28859 | 3' | -50.2 | NC_006146.1 | + | 12031 | 0.66 | 0.995586 |
Target: 5'- cGGCaGCUaCGUggCGGGUGC-GGCCACc -3' miRNA: 3'- -UCGcUGAaGUAa-GUCUAUGaCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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