miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 114985 0.66 0.994833
Target:  5'- aCGGCcgcgGACaucaaggccaugGCCGUGGagCUGG-UGGAGCg -3'
miRNA:   3'- -GCCG----CUG------------UGGUAUCa-GACCuACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 51578 0.66 0.994833
Target:  5'- aGGCGGCgcgGCCGaAGgggGGAcUGAGGCc -3'
miRNA:   3'- gCCGCUG---UGGUaUCagaCCU-ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 43253 0.66 0.994833
Target:  5'- uCGGCGcCAgCGcGGcCUGGAcaaGAGGCa -3'
miRNA:   3'- -GCCGCuGUgGUaUCaGACCUa--CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 12836 0.66 0.994833
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCUa-CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 129928 0.66 0.994517
Target:  5'- cCGGCGcgGCACCAcggcGGUCUacggcacGGAccugggguggguccUGAGGCa -3'
miRNA:   3'- -GCCGC--UGUGGUa---UCAGA-------CCU--------------ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 15163 0.66 0.994013
Target:  5'- gGGCGACGCCGUGGaagcgCUGa---AGGCc -3'
miRNA:   3'- gCCGCUGUGGUAUCa----GACcuacUUCG- -5'
28859 5' -51.5 NC_006146.1 + 26263 0.66 0.993091
Target:  5'- uGGgGGCACgGguggcggaauUAGcCUGGGUGGAGg -3'
miRNA:   3'- gCCgCUGUGgU----------AUCaGACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 151690 0.66 0.992894
Target:  5'- gGGCGGCGCCuuggggcccggAGUCUcGGAgGAucGCu -3'
miRNA:   3'- gCCGCUGUGGua---------UCAGA-CCUaCUu-CG- -5'
28859 5' -51.5 NC_006146.1 + 169984 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 57042 0.66 0.99206
Target:  5'- gGGCGAagcCGCCAgGGUUgaggcgGGAgGggGCc -3'
miRNA:   3'- gCCGCU---GUGGUaUCAGa-----CCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 167188 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 168120 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 169052 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 116137 0.66 0.990909
Target:  5'- aGGgGACAgCGUGGaagagacaCUGGGUGAcGGCc -3'
miRNA:   3'- gCCgCUGUgGUAUCa-------GACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 121183 0.66 0.990909
Target:  5'- aGGCGACAugaccggcauuCCGUGGcccCUGGA-GAGGg -3'
miRNA:   3'- gCCGCUGU-----------GGUAUCa--GACCUaCUUCg -5'
28859 5' -51.5 NC_006146.1 + 84675 0.66 0.990787
Target:  5'- uGGUGAaACUGUugaaucugggucaAGUCUGGGacuUGGAGCa -3'
miRNA:   3'- gCCGCUgUGGUA-------------UCAGACCU---ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 14130 0.66 0.989631
Target:  5'- gCGGCGGCcuacaGCCAgguGUacgcgCUGGccGUGGAGCu -3'
miRNA:   3'- -GCCGCUG-----UGGUau-CA-----GACC--UACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 166195 0.66 0.989631
Target:  5'- uGGgGAUugCAggUGGUCUcGGggGGAGUc -3'
miRNA:   3'- gCCgCUGugGU--AUCAGA-CCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 139063 0.66 0.989631
Target:  5'- uGGCGGcCACCAUacGGgccCUGG-UGgcGCg -3'
miRNA:   3'- gCCGCU-GUGGUA--UCa--GACCuACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 76419 0.66 0.989631
Target:  5'- gCGGCGugACCAU-GUUcacaugcccggUGGAgugcGAGGUg -3'
miRNA:   3'- -GCCGCugUGGUAuCAG-----------ACCUa---CUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.