Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 114985 | 0.66 | 0.994833 |
Target: 5'- aCGGCcgcgGACaucaaggccaugGCCGUGGagCUGG-UGGAGCg -3' miRNA: 3'- -GCCG----CUG------------UGGUAUCa-GACCuACUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 169052 | 0.66 | 0.99206 |
Target: 5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3' miRNA: 3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 116137 | 0.66 | 0.990909 |
Target: 5'- aGGgGACAgCGUGGaagagacaCUGGGUGAcGGCc -3' miRNA: 3'- gCCgCUGUgGUAUCa-------GACCUACU-UCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 57042 | 0.66 | 0.99206 |
Target: 5'- gGGCGAagcCGCCAgGGUUgaggcgGGAgGggGCc -3' miRNA: 3'- gCCGCU---GUGGUaUCAGa-----CCUaCuuCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 169984 | 0.66 | 0.99206 |
Target: 5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3' miRNA: 3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 168120 | 0.66 | 0.99206 |
Target: 5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3' miRNA: 3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 43253 | 0.66 | 0.994833 |
Target: 5'- uCGGCGcCAgCGcGGcCUGGAcaaGAGGCa -3' miRNA: 3'- -GCCGCuGUgGUaUCaGACCUa--CUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 51578 | 0.66 | 0.994833 |
Target: 5'- aGGCGGCgcgGCCGaAGgggGGAcUGAGGCc -3' miRNA: 3'- gCCGCUG---UGGUaUCagaCCU-ACUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 166195 | 0.66 | 0.989631 |
Target: 5'- uGGgGAUugCAggUGGUCUcGGggGGAGUc -3' miRNA: 3'- gCCgCUGugGU--AUCAGA-CCuaCUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 12836 | 0.66 | 0.994833 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCUa-CUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 129928 | 0.66 | 0.994517 |
Target: 5'- cCGGCGcgGCACCAcggcGGUCUacggcacGGAccugggguggguccUGAGGCa -3' miRNA: 3'- -GCCGC--UGUGGUa---UCAGA-------CCU--------------ACUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 167188 | 0.66 | 0.99206 |
Target: 5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3' miRNA: 3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 15163 | 0.66 | 0.994013 |
Target: 5'- gGGCGACGCCGUGGaagcgCUGa---AGGCc -3' miRNA: 3'- gCCGCUGUGGUAUCa----GACcuacUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 26263 | 0.66 | 0.993091 |
Target: 5'- uGGgGGCACgGguggcggaauUAGcCUGGGUGGAGg -3' miRNA: 3'- gCCgCUGUGgU----------AUCaGACCUACUUCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 151690 | 0.66 | 0.992894 |
Target: 5'- gGGCGGCGCCuuggggcccggAGUCUcGGAgGAucGCu -3' miRNA: 3'- gCCGCUGUGGua---------UCAGA-CCUaCUu-CG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 121183 | 0.66 | 0.990909 |
Target: 5'- aGGCGACAugaccggcauuCCGUGGcccCUGGA-GAGGg -3' miRNA: 3'- gCCGCUGU-----------GGUAUCa--GACCUaCUUCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 139063 | 0.66 | 0.989631 |
Target: 5'- uGGCGGcCACCAUacGGgccCUGG-UGgcGCg -3' miRNA: 3'- gCCGCU-GUGGUA--UCa--GACCuACuuCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 76419 | 0.66 | 0.989631 |
Target: 5'- gCGGCGugACCAU-GUUcacaugcccggUGGAgugcGAGGUg -3' miRNA: 3'- -GCCGCugUGGUAuCAG-----------ACCUa---CUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 14130 | 0.66 | 0.989631 |
Target: 5'- gCGGCGGCcuacaGCCAgguGUacgcgCUGGccGUGGAGCu -3' miRNA: 3'- -GCCGCUG-----UGGUau-CA-----GACC--UACUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 84675 | 0.66 | 0.990787 |
Target: 5'- uGGUGAaACUGUugaaucugggucaAGUCUGGGacuUGGAGCa -3' miRNA: 3'- gCCGCUgUGGUA-------------UCAGACCU---ACUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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