Results 21 - 40 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 47671 | 0.69 | 0.949463 |
Target: 5'- gCGGCG--GCCAgGGUCucgUGGAUGGAGg -3' miRNA: 3'- -GCCGCugUGGUaUCAG---ACCUACUUCg -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 9677 | 0.69 | 0.949463 |
Target: 5'- gGGaGAUguugGCCGUGGUCaGGAUGAGGa -3' miRNA: 3'- gCCgCUG----UGGUAUCAGaCCUACUUCg -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 57401 | 0.69 | 0.953624 |
Target: 5'- uGGCG--GCCAUGGcccccucCUGGAUGAagAGCg -3' miRNA: 3'- gCCGCugUGGUAUCa------GACCUACU--UCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 40130 | 0.69 | 0.953624 |
Target: 5'- uGG-GACACC---GUCUGGAggGggGCu -3' miRNA: 3'- gCCgCUGUGGuauCAGACCUa-CuuCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 153348 | 0.69 | 0.957166 |
Target: 5'- uGGCGGCGCagggaguCAUAGgcaaauuggaUCUGGAUGGuGGCc -3' miRNA: 3'- gCCGCUGUG-------GUAUC----------AGACCUACU-UCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 15915 | 0.69 | 0.961238 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 22070 | 0.69 | 0.961238 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 26202 | 0.69 | 0.961238 |
Target: 5'- gGGCGGCcugggaaccaagACCA-GGUCgUGGA-GAAGCa -3' miRNA: 3'- gCCGCUG------------UGGUaUCAG-ACCUaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 139857 | 0.69 | 0.961238 |
Target: 5'- gGGUGACGCCAUGGg--GG--GAGGUg -3' miRNA: 3'- gCCGCUGUGGUAUCagaCCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 18992 | 0.69 | 0.961238 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 25148 | 0.69 | 0.961238 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 28226 | 0.69 | 0.961238 |
Target: 5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3' miRNA: 3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 154662 | 0.69 | 0.9647 |
Target: 5'- cCGGCuGCACCGUGGU--GGcggGggGCg -3' miRNA: 3'- -GCCGcUGUGGUAUCAgaCCua-CuuCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 153147 | 0.68 | 0.967939 |
Target: 5'- -aGUGugACCGUGGcCUGGuUGAcgGGCa -3' miRNA: 3'- gcCGCugUGGUAUCaGACCuACU--UCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 45920 | 0.68 | 0.967939 |
Target: 5'- cCGGUGACcguGCCGUAGg-UGGAcGggGUc -3' miRNA: 3'- -GCCGCUG---UGGUAUCagACCUaCuuCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 19206 | 0.68 | 0.96794 |
Target: 5'- aGGCG-CGCCucagGGcCUGGAcgUGGAGUu -3' miRNA: 3'- gCCGCuGUGGua--UCaGACCU--ACUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 67969 | 0.68 | 0.970375 |
Target: 5'- gGGCGACuACCugcugacgCaGGAUGAAGCc -3' miRNA: 3'- gCCGCUG-UGGuauca---GaCCUACUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 133505 | 0.68 | 0.970962 |
Target: 5'- -cGCGGCcccuCCGUcuuuauaacAGUCUGGAagUGAGGCc -3' miRNA: 3'- gcCGCUGu---GGUA---------UCAGACCU--ACUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 77924 | 0.68 | 0.970962 |
Target: 5'- gGGCGGCcucgcagguGCCGggggucgcuguuUGGUCUGGGccGGAGCc -3' miRNA: 3'- gCCGCUG---------UGGU------------AUCAGACCUa-CUUCG- -5' |
|||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 40434 | 0.68 | 0.970962 |
Target: 5'- gGGCGGCAgcggccCCGUAGgc-GGGUGcGGCa -3' miRNA: 3'- gCCGCUGU------GGUAUCagaCCUACuUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home