miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 33208 0.67 0.988218
Target:  5'- gGGgGAgGCCGgagGGggagCcgGGAUGggGCu -3'
miRNA:   3'- gCCgCUgUGGUa--UCa---Ga-CCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 46721 0.67 0.988218
Target:  5'- gCGGCGGCuCCGaGG-CgGGcgGAGGCc -3'
miRNA:   3'- -GCCGCUGuGGUaUCaGaCCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 46452 0.67 0.988218
Target:  5'- aGGCGGCGgCGUAGgCcGGAUGcguGCc -3'
miRNA:   3'- gCCGCUGUgGUAUCaGaCCUACuu-CG- -5'
28859 5' -51.5 NC_006146.1 + 152899 0.67 0.986659
Target:  5'- uGGCGAUGCCGUccAGcUCgaUGGucuUGAAGUg -3'
miRNA:   3'- gCCGCUGUGGUA--UC-AG--ACCu--ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 101691 0.67 0.986659
Target:  5'- gGGCGGCGCUAgagGGgg-GGAgaGAGCa -3'
miRNA:   3'- gCCGCUGUGGUa--UCagaCCUacUUCG- -5'
28859 5' -51.5 NC_006146.1 + 123378 0.67 0.98565
Target:  5'- aGGCGGCGCCcccgacacugccgcuGUAGUCcccGGccuUGggGUa -3'
miRNA:   3'- gCCGCUGUGG---------------UAUCAGa--CCu--ACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 77448 0.67 0.983071
Target:  5'- uGGauuuCACCAUGGUCUagGGAUGAGa- -3'
miRNA:   3'- gCCgcu-GUGGUAUCAGA--CCUACUUcg -5'
28859 5' -51.5 NC_006146.1 + 100217 0.67 0.981864
Target:  5'- aGGCGGC-CCGUGGcCUGaGUGAucaucaccucccgcuGGCg -3'
miRNA:   3'- gCCGCUGuGGUAUCaGACcUACU---------------UCG- -5'
28859 5' -51.5 NC_006146.1 + 39521 0.67 0.981024
Target:  5'- gGGUGGC-UgAUGGgCUGGggGAGGCg -3'
miRNA:   3'- gCCGCUGuGgUAUCaGACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 148581 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 31603 0.68 0.978798
Target:  5'- aGGCuGACACCAcGGg--GGAUG-GGCu -3'
miRNA:   3'- gCCG-CUGUGGUaUCagaCCUACuUCG- -5'
28859 5' -51.5 NC_006146.1 + 142425 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 145503 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 151659 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 154736 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 157814 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 32874 0.68 0.977373
Target:  5'- gCGGCGcgaggucccugccugGCACCAgGGUCcGGcugGggGCg -3'
miRNA:   3'- -GCCGC---------------UGUGGUaUCAGaCCua-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 139360 0.68 0.976384
Target:  5'- gGGCGGCGCCGgGGg--GGGUGccuGCu -3'
miRNA:   3'- gCCGCUGUGGUaUCagaCCUACuu-CG- -5'
28859 5' -51.5 NC_006146.1 + 121439 0.68 0.976384
Target:  5'- gCGGCccuCACCAUcccGGUCaUGGA-GAAGUa -3'
miRNA:   3'- -GCCGcu-GUGGUA---UCAG-ACCUaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 90279 0.68 0.976384
Target:  5'- aGGUaGAgGCCGUGGUCgaggacgaGGAaGggGCa -3'
miRNA:   3'- gCCG-CUgUGGUAUCAGa-------CCUaCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.