miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 111045 0.68 0.973775
Target:  5'- gGGCGACACCuccucccugAGUCacgGGAgccuGAGCc -3'
miRNA:   3'- gCCGCUGUGGua-------UCAGa--CCUac--UUCG- -5'
28859 5' -51.5 NC_006146.1 + 77924 0.68 0.970962
Target:  5'- gGGCGGCcucgcagguGCCGggggucgcuguuUGGUCUGGGccGGAGCc -3'
miRNA:   3'- gCCGCUG---------UGGU------------AUCAGACCUa-CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 40434 0.68 0.970962
Target:  5'- gGGCGGCAgcggccCCGUAGgc-GGGUGcGGCa -3'
miRNA:   3'- gCCGCUGU------GGUAUCagaCCUACuUCG- -5'
28859 5' -51.5 NC_006146.1 + 133505 0.68 0.970962
Target:  5'- -cGCGGCcccuCCGUcuuuauaacAGUCUGGAagUGAGGCc -3'
miRNA:   3'- gcCGCUGu---GGUA---------UCAGACCU--ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 67969 0.68 0.970375
Target:  5'- gGGCGACuACCugcugacgCaGGAUGAAGCc -3'
miRNA:   3'- gCCGCUG-UGGuauca---GaCCUACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 19206 0.68 0.96794
Target:  5'- aGGCG-CGCCucagGGcCUGGAcgUGGAGUu -3'
miRNA:   3'- gCCGCuGUGGua--UCaGACCU--ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 153147 0.68 0.967939
Target:  5'- -aGUGugACCGUGGcCUGGuUGAcgGGCa -3'
miRNA:   3'- gcCGCugUGGUAUCaGACCuACU--UCG- -5'
28859 5' -51.5 NC_006146.1 + 45920 0.68 0.967939
Target:  5'- cCGGUGACcguGCCGUAGg-UGGAcGggGUc -3'
miRNA:   3'- -GCCGCUG---UGGUAUCagACCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 154662 0.69 0.9647
Target:  5'- cCGGCuGCACCGUGGU--GGcggGggGCg -3'
miRNA:   3'- -GCCGcUGUGGUAUCAgaCCua-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 18992 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 22070 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 25148 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 28226 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 26202 0.69 0.961238
Target:  5'- gGGCGGCcugggaaccaagACCA-GGUCgUGGA-GAAGCa -3'
miRNA:   3'- gCCGCUG------------UGGUaUCAG-ACCUaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 15915 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 139857 0.69 0.961238
Target:  5'- gGGUGACGCCAUGGg--GG--GAGGUg -3'
miRNA:   3'- gCCGCUGUGGUAUCagaCCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 153348 0.69 0.957166
Target:  5'- uGGCGGCGCagggaguCAUAGgcaaauuggaUCUGGAUGGuGGCc -3'
miRNA:   3'- gCCGCUGUG-------GUAUC----------AGACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 40130 0.69 0.953624
Target:  5'- uGG-GACACC---GUCUGGAggGggGCu -3'
miRNA:   3'- gCCgCUGUGGuauCAGACCUa-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 57401 0.69 0.953624
Target:  5'- uGGCG--GCCAUGGcccccucCUGGAUGAagAGCg -3'
miRNA:   3'- gCCGCugUGGUAUCa------GACCUACU--UCG- -5'
28859 5' -51.5 NC_006146.1 + 47671 0.69 0.949463
Target:  5'- gCGGCG--GCCAgGGUCucgUGGAUGGAGg -3'
miRNA:   3'- -GCCGCugUGGUaUCAG---ACCUACUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.