miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 9677 0.69 0.949463
Target:  5'- gGGaGAUguugGCCGUGGUCaGGAUGAGGa -3'
miRNA:   3'- gCCgCUG----UGGUAUCAGaCCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 12836 0.66 0.994833
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCUa-CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 14130 0.66 0.989631
Target:  5'- gCGGCGGCcuacaGCCAgguGUacgcgCUGGccGUGGAGCu -3'
miRNA:   3'- -GCCGCUG-----UGGUau-CA-----GACC--UACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 15163 0.66 0.994013
Target:  5'- gGGCGACGCCGUGGaagcgCUGa---AGGCc -3'
miRNA:   3'- gCCGCUGUGGUAUCa----GACcuacUUCG- -5'
28859 5' -51.5 NC_006146.1 + 15915 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 17595 0.73 0.824648
Target:  5'- gGGCGACcugGCCcgGGcCUGGugccUGGAGCa -3'
miRNA:   3'- gCCGCUG---UGGuaUCaGACCu---ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 18992 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 19206 0.68 0.96794
Target:  5'- aGGCG-CGCCucagGGcCUGGAcgUGGAGUu -3'
miRNA:   3'- gCCGCuGUGGua--UCaGACCU--ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 22070 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 23951 0.71 0.91347
Target:  5'- gCGGCGACuuucccCCcgGGUC-GGGUGggGg -3'
miRNA:   3'- -GCCGCUGu-----GGuaUCAGaCCUACuuCg -5'
28859 5' -51.5 NC_006146.1 + 25148 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 26202 0.69 0.961238
Target:  5'- gGGCGGCcugggaaccaagACCA-GGUCgUGGA-GAAGCa -3'
miRNA:   3'- gCCGCUG------------UGGUaUCAG-ACCUaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 26263 0.66 0.993091
Target:  5'- uGGgGGCACgGguggcggaauUAGcCUGGGUGGAGg -3'
miRNA:   3'- gCCgCUGUGgU----------AUCaGACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 28226 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 31603 0.68 0.978798
Target:  5'- aGGCuGACACCAcGGg--GGAUG-GGCu -3'
miRNA:   3'- gCCG-CUGUGGUaUCagaCCUACuUCG- -5'
28859 5' -51.5 NC_006146.1 + 32874 0.68 0.977373
Target:  5'- gCGGCGcgaggucccugccugGCACCAgGGUCcGGcugGggGCg -3'
miRNA:   3'- -GCCGC---------------UGUGGUaUCAGaCCua-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 33208 0.67 0.988218
Target:  5'- gGGgGAgGCCGgagGGggagCcgGGAUGggGCu -3'
miRNA:   3'- gCCgCUgUGGUa--UCa---Ga-CCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 39521 0.67 0.981024
Target:  5'- gGGUGGC-UgAUGGgCUGGggGAGGCg -3'
miRNA:   3'- gCCGCUGuGgUAUCaGACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 40130 0.69 0.953624
Target:  5'- uGG-GACACC---GUCUGGAggGggGCu -3'
miRNA:   3'- gCCgCUGUGGuauCAGACCUa-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 40434 0.68 0.970962
Target:  5'- gGGCGGCAgcggccCCGUAGgc-GGGUGcGGCa -3'
miRNA:   3'- gCCGCUGU------GGUAUCagaCCUACuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.