miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 43253 0.66 0.994833
Target:  5'- uCGGCGcCAgCGcGGcCUGGAcaaGAGGCa -3'
miRNA:   3'- -GCCGCuGUgGUaUCaGACCUa--CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 45817 1.13 0.005314
Target:  5'- cCGGCGACACCAUAGUCUGGAUGAAGCu -3'
miRNA:   3'- -GCCGCUGUGGUAUCAGACCUACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 45920 0.68 0.967939
Target:  5'- cCGGUGACcguGCCGUAGg-UGGAcGggGUc -3'
miRNA:   3'- -GCCGCUG---UGGUAUCagACCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 46452 0.67 0.988218
Target:  5'- aGGCGGCGgCGUAGgCcGGAUGcguGCc -3'
miRNA:   3'- gCCGCUGUgGUAUCaGaCCUACuu-CG- -5'
28859 5' -51.5 NC_006146.1 + 46721 0.67 0.988218
Target:  5'- gCGGCGGCuCCGaGG-CgGGcgGAGGCc -3'
miRNA:   3'- -GCCGCUGuGGUaUCaGaCCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 47671 0.69 0.949463
Target:  5'- gCGGCG--GCCAgGGUCucgUGGAUGGAGg -3'
miRNA:   3'- -GCCGCugUGGUaUCAG---ACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 51578 0.66 0.994833
Target:  5'- aGGCGGCgcgGCCGaAGgggGGAcUGAGGCc -3'
miRNA:   3'- gCCGCUG---UGGUaUCagaCCU-ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 57042 0.66 0.99206
Target:  5'- gGGCGAagcCGCCAgGGUUgaggcgGGAgGggGCc -3'
miRNA:   3'- gCCGCU---GUGGUaUCAGa-----CCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 57401 0.69 0.953624
Target:  5'- uGGCG--GCCAUGGcccccucCUGGAUGAagAGCg -3'
miRNA:   3'- gCCGCugUGGUAUCa------GACCUACU--UCG- -5'
28859 5' -51.5 NC_006146.1 + 63771 0.79 0.52437
Target:  5'- aGGUGaACACCGUucugcuuGUCUGGGUGAAGg -3'
miRNA:   3'- gCCGC-UGUGGUAu------CAGACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 67969 0.68 0.970375
Target:  5'- gGGCGACuACCugcugacgCaGGAUGAAGCc -3'
miRNA:   3'- gCCGCUG-UGGuauca---GaCCUACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 68517 0.71 0.907338
Target:  5'- cCGGCGACGagucaacuCCAUAGcCaacgUGGAUGggGg -3'
miRNA:   3'- -GCCGCUGU--------GGUAUCaG----ACCUACuuCg -5'
28859 5' -51.5 NC_006146.1 + 72374 0.8 0.475239
Target:  5'- gCGGCGACgaaACCcgAGUC-GGGUGggGCc -3'
miRNA:   3'- -GCCGCUG---UGGuaUCAGaCCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 76419 0.66 0.989631
Target:  5'- gCGGCGugACCAU-GUUcacaugcccggUGGAgugcGAGGUg -3'
miRNA:   3'- -GCCGCugUGGUAuCAG-----------ACCUa---CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 77448 0.67 0.983071
Target:  5'- uGGauuuCACCAUGGUCUagGGAUGAGa- -3'
miRNA:   3'- gCCgcu-GUGGUAUCAGA--CCUACUUcg -5'
28859 5' -51.5 NC_006146.1 + 77924 0.68 0.970962
Target:  5'- gGGCGGCcucgcagguGCCGggggucgcuguuUGGUCUGGGccGGAGCc -3'
miRNA:   3'- gCCGCUG---------UGGU------------AUCAGACCUa-CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 84675 0.66 0.990787
Target:  5'- uGGUGAaACUGUugaaucugggucaAGUCUGGGacuUGGAGCa -3'
miRNA:   3'- gCCGCUgUGGUA-------------UCAGACCU---ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 90279 0.68 0.976384
Target:  5'- aGGUaGAgGCCGUGGUCgaggacgaGGAaGggGCa -3'
miRNA:   3'- gCCG-CUgUGGUAUCAGa-------CCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 93466 0.74 0.788629
Target:  5'- uGGagcuGAUGCCAUAGUCUcGGAUGccGCa -3'
miRNA:   3'- gCCg---CUGUGGUAUCAGA-CCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 100217 0.67 0.981864
Target:  5'- aGGCGGC-CCGUGGcCUGaGUGAucaucaccucccgcuGGCg -3'
miRNA:   3'- gCCGCUGuGGUAUCaGACcUACU---------------UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.