miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 170195 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 170159 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 169984 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 169264 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 169228 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 169052 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 168332 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 168296 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 168120 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 167400 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 167364 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 167188 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 166195 0.66 0.989631
Target:  5'- uGGgGAUugCAggUGGUCUcGGggGGAGUc -3'
miRNA:   3'- gCCgCUGugGU--AUCAGA-CCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 157814 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 154736 0.68 0.978798
Target:  5'- uGGCGAC-CCuggGGUCUGucUGggGg -3'
miRNA:   3'- gCCGCUGuGGua-UCAGACcuACuuCg -5'
28859 5' -51.5 NC_006146.1 + 154662 0.69 0.9647
Target:  5'- cCGGCuGCACCGUGGU--GGcggGggGCg -3'
miRNA:   3'- -GCCGcUGUGGUAUCAgaCCua-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 153348 0.69 0.957166
Target:  5'- uGGCGGCGCagggaguCAUAGgcaaauuggaUCUGGAUGGuGGCc -3'
miRNA:   3'- gCCGCUGUG-------GUAUC----------AGACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 153147 0.68 0.967939
Target:  5'- -aGUGugACCGUGGcCUGGuUGAcgGGCa -3'
miRNA:   3'- gcCGCugUGGUAUCaGACCuACU--UCG- -5'
28859 5' -51.5 NC_006146.1 + 152899 0.67 0.986659
Target:  5'- uGGCGAUGCCGUccAGcUCgaUGGucuUGAAGUg -3'
miRNA:   3'- gCCGCUGUGGUA--UC-AG--ACCu--ACUUCG- -5'
28859 5' -51.5 NC_006146.1 + 152060 0.71 0.900961
Target:  5'- cCGGCaGCGCCcggGGUCUGGA---AGCa -3'
miRNA:   3'- -GCCGcUGUGGua-UCAGACCUacuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.