miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 63771 0.79 0.52437
Target:  5'- aGGUGaACACCGUucugcuuGUCUGGGUGAAGg -3'
miRNA:   3'- gCCGC-UGUGGUAu------CAGACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 18992 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 25148 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 12836 0.66 0.994833
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCUa-CUUCG- -5'
28859 5' -51.5 NC_006146.1 + 170195 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 93466 0.74 0.788629
Target:  5'- uGGagcuGAUGCCAUAGUCUcGGAUGccGCa -3'
miRNA:   3'- gCCg---CUGUGGUAUCAGA-CCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 120379 0.7 0.923329
Target:  5'- aCGGCGuuCACCGUcAGUCUguucuucaccgacgGGGUGggGg -3'
miRNA:   3'- -GCCGCu-GUGGUA-UCAGA--------------CCUACuuCg -5'
28859 5' -51.5 NC_006146.1 + 101895 0.7 0.924994
Target:  5'- gGGaaaaGGCGCCcaGGUCUGGAgcUGAAGg -3'
miRNA:   3'- gCCg---CUGUGGuaUCAGACCU--ACUUCg -5'
28859 5' -51.5 NC_006146.1 + 169228 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 15915 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 47671 0.69 0.949463
Target:  5'- gCGGCG--GCCAgGGUCucgUGGAUGGAGg -3'
miRNA:   3'- -GCCGCugUGGUaUCAG---ACCUACUUCg -5'
28859 5' -51.5 NC_006146.1 + 168296 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 167400 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 40130 0.69 0.953624
Target:  5'- uGG-GACACC---GUCUGGAggGggGCu -3'
miRNA:   3'- gCCgCUGUGGuauCAGACCUa-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 168332 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 167364 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 153348 0.69 0.957166
Target:  5'- uGGCGGCGCagggaguCAUAGgcaaauuggaUCUGGAUGGuGGCc -3'
miRNA:   3'- gCCGCUGUG-------GUAUC----------AGACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 22070 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 169264 0.75 0.740385
Target:  5'- gGGCGGgGCCGgGGcCUGGcgGggGCc -3'
miRNA:   3'- gCCGCUgUGGUaUCaGACCuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 152060 0.71 0.900961
Target:  5'- cCGGCaGCGCCcggGGUCUGGA---AGCa -3'
miRNA:   3'- -GCCGcUGUGGua-UCAGACCUacuUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.