miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28859 5' -51.5 NC_006146.1 + 45920 0.68 0.967939
Target:  5'- cCGGUGACcguGCCGUAGg-UGGAcGggGUc -3'
miRNA:   3'- -GCCGCUG---UGGUAUCagACCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 154662 0.69 0.9647
Target:  5'- cCGGCuGCACCGUGGU--GGcggGggGCg -3'
miRNA:   3'- -GCCGcUGUGGUAUCAgaCCua-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 40130 0.69 0.953624
Target:  5'- uGG-GACACC---GUCUGGAggGggGCu -3'
miRNA:   3'- gCCgCUGUGGuauCAGACCUa-CuuCG- -5'
28859 5' -51.5 NC_006146.1 + 120379 0.7 0.923329
Target:  5'- aCGGCGuuCACCGUcAGUCUguucuucaccgacgGGGUGggGg -3'
miRNA:   3'- -GCCGCu-GUGGUA-UCAGA--------------CCUACuuCg -5'
28859 5' -51.5 NC_006146.1 + 116137 0.66 0.990909
Target:  5'- aGGgGACAgCGUGGaagagacaCUGGGUGAcGGCc -3'
miRNA:   3'- gCCgCUGUgGUAUCa-------GACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 77448 0.67 0.983071
Target:  5'- uGGauuuCACCAUGGUCUagGGAUGAGa- -3'
miRNA:   3'- gCCgcu-GUGGUAUCAGA--CCUACUUcg -5'
28859 5' -51.5 NC_006146.1 + 25148 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 152060 0.71 0.900961
Target:  5'- cCGGCaGCGCCcggGGUCUGGA---AGCa -3'
miRNA:   3'- -GCCGcUGUGGua-UCAGACCUacuUCG- -5'
28859 5' -51.5 NC_006146.1 + 90279 0.68 0.976384
Target:  5'- aGGUaGAgGCCGUGGUCgaggacgaGGAaGggGCa -3'
miRNA:   3'- gCCG-CUgUGGUAUCAGa-------CCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 93466 0.74 0.788629
Target:  5'- uGGagcuGAUGCCAUAGUCUcGGAUGccGCa -3'
miRNA:   3'- gCCg---CUGUGGUAUCAGA-CCUACuuCG- -5'
28859 5' -51.5 NC_006146.1 + 28226 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 153147 0.68 0.967939
Target:  5'- -aGUGugACCGUGGcCUGGuUGAcgGGCa -3'
miRNA:   3'- gcCGCugUGGUAUCaGACCuACU--UCG- -5'
28859 5' -51.5 NC_006146.1 + 22070 0.69 0.961238
Target:  5'- cCGGCGGCcggACCcgAGgaggcgcCUGGgcGAGGCu -3'
miRNA:   3'- -GCCGCUG---UGGuaUCa------GACCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 153348 0.69 0.957166
Target:  5'- uGGCGGCGCagggaguCAUAGgcaaauuggaUCUGGAUGGuGGCc -3'
miRNA:   3'- gCCGCUGUG-------GUAUC----------AGACCUACU-UCG- -5'
28859 5' -51.5 NC_006146.1 + 169228 0.7 0.930383
Target:  5'- gCGGCGGCGCCGgccgGGggCUGag-GggGCu -3'
miRNA:   3'- -GCCGCUGUGGUa---UCa-GACcuaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 101895 0.7 0.924994
Target:  5'- gGGaaaaGGCGCCcaGGUCUGGAgcUGAAGg -3'
miRNA:   3'- gCCg---CUGUGGuaUCAGACCU--ACUUCg -5'
28859 5' -51.5 NC_006146.1 + 169052 0.66 0.99206
Target:  5'- cCGGCGcGCGCCcggGGUCccgGGggGcGGCg -3'
miRNA:   3'- -GCCGC-UGUGGua-UCAGa--CCuaCuUCG- -5'
28859 5' -51.5 NC_006146.1 + 57042 0.66 0.99206
Target:  5'- gGGCGAagcCGCCAgGGUUgaggcgGGAgGggGCc -3'
miRNA:   3'- gCCGCU---GUGGUaUCAGa-----CCUaCuuCG- -5'
28859 5' -51.5 NC_006146.1 + 46721 0.67 0.988218
Target:  5'- gCGGCGGCuCCGaGG-CgGGcgGAGGCc -3'
miRNA:   3'- -GCCGCUGuGGUaUCaGaCCuaCUUCG- -5'
28859 5' -51.5 NC_006146.1 + 123378 0.67 0.98565
Target:  5'- aGGCGGCGCCcccgacacugccgcuGUAGUCcccGGccuUGggGUa -3'
miRNA:   3'- gCCGCUGUGG---------------UAUCAGa--CCu--ACuuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.