Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28859 | 5' | -51.5 | NC_006146.1 | + | 139360 | 0.68 | 0.976384 |
Target: 5'- gGGCGGCGCCGgGGg--GGGUGccuGCu -3' miRNA: 3'- gCCGCUGUGGUaUCagaCCUACuu-CG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 157814 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 154736 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 151659 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 148581 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 145503 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 142425 | 0.68 | 0.978798 |
Target: 5'- uGGCGAC-CCuggGGUCUGucUGggGg -3' miRNA: 3'- gCCGCUGuGGua-UCAGACcuACuuCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 31603 | 0.68 | 0.978798 |
Target: 5'- aGGCuGACACCAcGGg--GGAUG-GGCu -3' miRNA: 3'- gCCG-CUGUGGUaUCagaCCUACuUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 32874 | 0.68 | 0.977373 |
Target: 5'- gCGGCGcgaggucccugccugGCACCAgGGUCcGGcugGggGCg -3' miRNA: 3'- -GCCGC---------------UGUGGUaUCAGaCCua-CuuCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 39521 | 0.67 | 0.981024 |
Target: 5'- gGGUGGC-UgAUGGgCUGGggGAGGCg -3' miRNA: 3'- gCCGCUGuGgUAUCaGACCuaCUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 100217 | 0.67 | 0.981864 |
Target: 5'- aGGCGGC-CCGUGGcCUGaGUGAucaucaccucccgcuGGCg -3' miRNA: 3'- gCCGCUGuGGUAUCaGACcUACU---------------UCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 101691 | 0.67 | 0.986659 |
Target: 5'- gGGCGGCGCUAgagGGgg-GGAgaGAGCa -3' miRNA: 3'- gCCGCUGUGGUa--UCagaCCUacUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 15163 | 0.66 | 0.994013 |
Target: 5'- gGGCGACGCCGUGGaagcgCUGa---AGGCc -3' miRNA: 3'- gCCGCUGUGGUAUCa----GACcuacUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 26263 | 0.66 | 0.993091 |
Target: 5'- uGGgGGCACgGguggcggaauUAGcCUGGGUGGAGg -3' miRNA: 3'- gCCgCUGUGgU----------AUCaGACCUACUUCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 151690 | 0.66 | 0.992894 |
Target: 5'- gGGCGGCGCCuuggggcccggAGUCUcGGAgGAucGCu -3' miRNA: 3'- gCCGCUGUGGua---------UCAGA-CCUaCUu-CG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 121183 | 0.66 | 0.990909 |
Target: 5'- aGGCGACAugaccggcauuCCGUGGcccCUGGA-GAGGg -3' miRNA: 3'- gCCGCUGU-----------GGUAUCa--GACCUaCUUCg -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 139063 | 0.66 | 0.989631 |
Target: 5'- uGGCGGcCACCAUacGGgccCUGG-UGgcGCg -3' miRNA: 3'- gCCGCU-GUGGUA--UCa--GACCuACuuCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 76419 | 0.66 | 0.989631 |
Target: 5'- gCGGCGugACCAU-GUUcacaugcccggUGGAgugcGAGGUg -3' miRNA: 3'- -GCCGCugUGGUAuCAG-----------ACCUa---CUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 14130 | 0.66 | 0.989631 |
Target: 5'- gCGGCGGCcuacaGCCAgguGUacgcgCUGGccGUGGAGCu -3' miRNA: 3'- -GCCGCUG-----UGGUau-CA-----GACC--UACUUCG- -5' |
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28859 | 5' | -51.5 | NC_006146.1 | + | 33208 | 0.67 | 0.988218 |
Target: 5'- gGGgGAgGCCGgagGGggagCcgGGAUGggGCu -3' miRNA: 3'- gCCgCUgUGGUa--UCa---Ga-CCUACuuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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