miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2886 5' -56 NC_001493.1 + 81453 0.67 0.828426
Target:  5'- cCACG-GUcgG-GGCgUCAGUGUCGCCc -3'
miRNA:   3'- -GUGCuCGuaCgUCG-AGUCACAGCGGa -5'
2886 5' -56 NC_001493.1 + 63863 0.69 0.683652
Target:  5'- cCGCGGGCGUGCcguGGUgauauucgCGGUGUCGUUg -3'
miRNA:   3'- -GUGCUCGUACG---UCGa-------GUCACAGCGGa -5'
2886 5' -56 NC_001493.1 + 125211 0.7 0.642005
Target:  5'- uCGCGuGCG-GCAGUUgAGUgGUCGCCg -3'
miRNA:   3'- -GUGCuCGUaCGUCGAgUCA-CAGCGGa -5'
2886 5' -56 NC_001493.1 + 9656 0.7 0.642005
Target:  5'- uCGCGuGCG-GCAGUUgAGUgGUCGCCg -3'
miRNA:   3'- -GUGCuCGUaCGUCGAgUCA-CAGCGGa -5'
2886 5' -56 NC_001493.1 + 120722 0.72 0.519278
Target:  5'- -cCGAGCGUGCAGC-CGGUGgacuuccucgucaggCGCCc -3'
miRNA:   3'- guGCUCGUACGUCGaGUCACa--------------GCGGa -5'
2886 5' -56 NC_001493.1 + 47738 0.74 0.413917
Target:  5'- gCACGAGCA-GCGGCUUuGUGaCGCCc -3'
miRNA:   3'- -GUGCUCGUaCGUCGAGuCACaGCGGa -5'
2886 5' -56 NC_001493.1 + 5167 0.74 0.405955
Target:  5'- -cCGAGCGUGCAGC-CGGUGgacuuccucgucaggCGCCUc -3'
miRNA:   3'- guGCUCGUACGUCGaGUCACa--------------GCGGA- -5'
2886 5' -56 NC_001493.1 + 128725 1.07 0.00294
Target:  5'- cCACGAGCAUGCAGCUCAGUGUCGCCUu -3'
miRNA:   3'- -GUGCUCGUACGUCGAGUCACAGCGGA- -5'
2886 5' -56 NC_001493.1 + 13171 1.07 0.00294
Target:  5'- cCACGAGCAUGCAGCUCAGUGUCGCCUu -3'
miRNA:   3'- -GUGCUCGUACGUCGAGUCACAGCGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.