miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 78378 0.66 0.91989
Target:  5'- cCCagGGAGguguccuccuCGUCCUCugauaGGAGcCGCUGGg -3'
miRNA:   3'- -GGa-CCUC----------GCAGGAGuc---CCUU-GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 118272 0.66 0.919342
Target:  5'- gCCa-GAGCGgcaUCCUCAGGGGGCacgagauggcccaGCUGa -3'
miRNA:   3'- -GGacCUCGC---AGGAGUCCCUUG-------------CGACc -5'
28860 3' -57.1 NC_006146.1 + 113041 0.66 0.914306
Target:  5'- gCCaGGAcGuCGgCCUCGGGGuccACGUUGGc -3'
miRNA:   3'- -GGaCCU-C-GCaGGAGUCCCu--UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 22618 0.66 0.914306
Target:  5'- gCUGGAGC-UCCuguUCuGGG--UGCUGGg -3'
miRNA:   3'- gGACCUCGcAGG---AGuCCCuuGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 73432 0.66 0.908497
Target:  5'- cCCcGG-GCGUUguagaaCUCGGGGA-CGUUGGu -3'
miRNA:   3'- -GGaCCuCGCAG------GAGUCCCUuGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 12783 0.66 0.908497
Target:  5'- aCCUGGAcGCGgcCCUgCAGGGGcggACGUacGGa -3'
miRNA:   3'- -GGACCU-CGCa-GGA-GUCCCU---UGCGa-CC- -5'
28860 3' -57.1 NC_006146.1 + 44087 0.66 0.908497
Target:  5'- aCUGGGGUGguuccaCCUCGGGccgcGCGCUcGGc -3'
miRNA:   3'- gGACCUCGCa-----GGAGUCCcu--UGCGA-CC- -5'
28860 3' -57.1 NC_006146.1 + 43577 0.66 0.902465
Target:  5'- aCU-GAGCGUUCcCGGGGAGCGg-GGc -3'
miRNA:   3'- gGAcCUCGCAGGaGUCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 12859 0.66 0.889743
Target:  5'- gCCUGGGGCGaggCU----GGGugGCUGGg -3'
miRNA:   3'- -GGACCUCGCa--GGagucCCUugCGACC- -5'
28860 3' -57.1 NC_006146.1 + 32890 0.66 0.889743
Target:  5'- gCCUGGcaccAGgGUCCggCuGGGGGCGCa-- -3'
miRNA:   3'- -GGACC----UCgCAGGa-GuCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 124521 0.66 0.889743
Target:  5'- cCCUGGcgagGGaCGggggCCUgGGGGAGCuGCUGu -3'
miRNA:   3'- -GGACC----UC-GCa---GGAgUCCCUUG-CGACc -5'
28860 3' -57.1 NC_006146.1 + 71750 0.66 0.889743
Target:  5'- gCCUGGAGUGggaCUaau-GGACGCUGGc -3'
miRNA:   3'- -GGACCUCGCag-GAguccCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 53795 0.66 0.889084
Target:  5'- gCCUcGGcccgcgcGGCGUCCaUAGcGGGGgGCUGGa -3'
miRNA:   3'- -GGA-CC-------UCGCAGGaGUC-CCUUgCGACC- -5'
28860 3' -57.1 NC_006146.1 + 45327 0.67 0.883059
Target:  5'- uCCUGGAcguuGCGgggaUUCGGGGGAgGCcGGu -3'
miRNA:   3'- -GGACCU----CGCag--GAGUCCCUUgCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 24084 0.67 0.883059
Target:  5'- gCUGGcGCGgCCUCGccuGGGACGCgGGu -3'
miRNA:   3'- gGACCuCGCaGGAGUc--CCUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 40013 0.67 0.883059
Target:  5'- -gUGuGGGCGUag-CAGGGGGCcuGCUGGg -3'
miRNA:   3'- ggAC-CUCGCAggaGUCCCUUG--CGACC- -5'
28860 3' -57.1 NC_006146.1 + 64102 0.67 0.883059
Target:  5'- aCCUGG-G-GUCCUCGaGGAugGCacgGGu -3'
miRNA:   3'- -GGACCuCgCAGGAGUcCCUugCGa--CC- -5'
28860 3' -57.1 NC_006146.1 + 71491 0.67 0.883059
Target:  5'- uUUGGccGGUGgugCCUgGGGGAgGCGUUGGa -3'
miRNA:   3'- gGACC--UCGCa--GGAgUCCCU-UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 102377 0.67 0.876164
Target:  5'- --aGGucuccGgGUCCUCGGGGAGCuGgUGGu -3'
miRNA:   3'- ggaCCu----CgCAGGAGUCCCUUG-CgACC- -5'
28860 3' -57.1 NC_006146.1 + 57761 0.67 0.876164
Target:  5'- --cGGAuaG-CCUCGGGGGGCGUgGGa -3'
miRNA:   3'- ggaCCUcgCaGGAGUCCCUUGCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.