miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 45327 0.67 0.883059
Target:  5'- uCCUGGAcguuGCGgggaUUCGGGGGAgGCcGGu -3'
miRNA:   3'- -GGACCU----CGCag--GAGUCCCUUgCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 64102 0.67 0.883059
Target:  5'- aCCUGG-G-GUCCUCGaGGAugGCacgGGu -3'
miRNA:   3'- -GGACCuCgCAGGAGUcCCUugCGa--CC- -5'
28860 3' -57.1 NC_006146.1 + 64364 0.67 0.869063
Target:  5'- aCUGGAGUGgauggugCCcacCAGGGGAUGCg-- -3'
miRNA:   3'- gGACCUCGCa------GGa--GUCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 136720 0.67 0.861761
Target:  5'- gCCUGGcccAGgGUCCggCuGGGGGCGCa-- -3'
miRNA:   3'- -GGACC---UCgCAGGa-GuCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 161746 0.67 0.869063
Target:  5'- cCCgGGGGUggcggcugagGUCCg-AGGGGGCGcCUGGg -3'
miRNA:   3'- -GGaCCUCG----------CAGGagUCCCUUGC-GACC- -5'
28860 3' -57.1 NC_006146.1 + 117018 0.67 0.846574
Target:  5'- aCCUGGGcuaCGcCCUaacGGGGGCGCUGa -3'
miRNA:   3'- -GGACCUc--GCaGGAgu-CCCUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 32938 0.67 0.846574
Target:  5'- cCCgGGAggcccggccGCGaUCCUCccccgugaacGGGGcGCGCUGGg -3'
miRNA:   3'- -GGaCCU---------CGC-AGGAG----------UCCCuUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 102377 0.67 0.876164
Target:  5'- --aGGucuccGgGUCCUCGGGGAGCuGgUGGu -3'
miRNA:   3'- ggaCCu----CgCAGGAGUCCCUUG-CgACC- -5'
28860 3' -57.1 NC_006146.1 + 57761 0.67 0.876164
Target:  5'- --cGGAuaG-CCUCGGGGGGCGUgGGa -3'
miRNA:   3'- ggaCCUcgCaGGAGUCCCUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 24084 0.67 0.883059
Target:  5'- gCUGGcGCGgCCUCGccuGGGACGCgGGu -3'
miRNA:   3'- gGACCuCGCaGGAGUc--CCUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 40013 0.67 0.883059
Target:  5'- -gUGuGGGCGUag-CAGGGGGCcuGCUGGg -3'
miRNA:   3'- ggAC-CUCGCAggaGUCCCUUG--CGACC- -5'
28860 3' -57.1 NC_006146.1 + 136769 0.67 0.861761
Target:  5'- uCCgGGAggcccggccGCGaUCCUCccccgugaacGGGGcGCGCUGGg -3'
miRNA:   3'- -GGaCCU---------CGC-AGGAG----------UCCCuUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 156816 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 159826 0.68 0.82243
Target:  5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3'
miRNA:   3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 170681 0.68 0.805505
Target:  5'- gCCaGGGGCGcCC-CGGGGAccguCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 141203 0.68 0.82243
Target:  5'- aCCaGGGGC-UCCUgGGGGGAa-CUGGg -3'
miRNA:   3'- -GGaCCUCGcAGGAgUCCCUUgcGACC- -5'
28860 3' -57.1 NC_006146.1 + 141427 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 144505 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 147583 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 150661 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.