miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 44056 1.12 0.00194
Target:  5'- aCCUGGAGCGUCCUCAGGGAACGCUGGu -3'
miRNA:   3'- -GGACCUCGCAGGAGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 157026 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 153948 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 150870 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 144714 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 147792 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 141637 0.77 0.368119
Target:  5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3'
miRNA:   3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 132960 0.75 0.443241
Target:  5'- -gUGGAuuaucucuGgGUCCUCGGGGGGCGgUGGa -3'
miRNA:   3'- ggACCU--------CgCAGGAGUCCCUUGCgACC- -5'
28860 3' -57.1 NC_006146.1 + 49531 0.74 0.507243
Target:  5'- uCCgGGGGC-UCCUCuGGGGGCGgaGGc -3'
miRNA:   3'- -GGaCCUCGcAGGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 137742 0.73 0.565033
Target:  5'- uUCUGGAGC-UCCUgGGGGuccgcucgucCGCUGGu -3'
miRNA:   3'- -GGACCUCGcAGGAgUCCCuu--------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 104976 0.72 0.584709
Target:  5'- gCCUGGGGC-UCCcgAGGGGGCuCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGagUCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 167607 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 33917 0.72 0.594598
Target:  5'- uCCUGGAGC-UCCUCcguccgguGGGugcggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu-------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 168539 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 169471 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 170402 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 33559 0.71 0.664168
Target:  5'- cCCUGGuGC-UCCUcCGGGGGucgccgcguuCGCUGGu -3'
miRNA:   3'- -GGACCuCGcAGGA-GUCCCUu---------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 89856 0.71 0.674069
Target:  5'- -gUGGcGCGUCCUCgauugccucaguGGGGGGCGaUUGGg -3'
miRNA:   3'- ggACCuCGCAGGAG------------UCCCUUGC-GACC- -5'
28860 3' -57.1 NC_006146.1 + 11173 0.71 0.674069
Target:  5'- --aGGAGCG-CCUCuacggGGGGAAC-CUGGu -3'
miRNA:   3'- ggaCCUCGCaGGAG-----UCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 114603 0.71 0.683938
Target:  5'- gCCUGG-GCcaCCUCgAGGcGGCGCUGGa -3'
miRNA:   3'- -GGACCuCGcaGGAG-UCCcUUGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.