miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 122475 0.7 0.703546
Target:  5'- aCUGcGAGCGUUgCUCGGGGAcgGCgGCgGGg -3'
miRNA:   3'- gGAC-CUCGCAG-GAGUCCCU--UG-CGaCC- -5'
28860 3' -57.1 NC_006146.1 + 12313 0.7 0.722926
Target:  5'- gCUGGAGCGgcugUCUCGgcuGGGcauaGACGCUGa -3'
miRNA:   3'- gGACCUCGCa---GGAGU---CCC----UUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 111281 0.7 0.722926
Target:  5'- gCCUGGAGCacuuuuUCCUCaaggaccugacGGGGGACGCc-- -3'
miRNA:   3'- -GGACCUCGc-----AGGAG-----------UCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 56259 0.7 0.732509
Target:  5'- --cGGGGcCGUCCUCggcGGGGAGCGa-GGa -3'
miRNA:   3'- ggaCCUC-GCAGGAG---UCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 128562 0.69 0.760732
Target:  5'- uCCUGGAGCGgcaguucgcggCCUCGGacgacuacgaccGGcuguacuuucuGGCGCUGGg -3'
miRNA:   3'- -GGACCUCGCa----------GGAGUC------------CC-----------UUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 92092 0.69 0.769935
Target:  5'- gCCUGGAcGCGUgggCCUCccAGGGAGuauUGCUGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAG--UCCCUU---GCGACc -5'
28860 3' -57.1 NC_006146.1 + 46750 0.69 0.776309
Target:  5'- gCUGGccAGgGUCCUCgccucccgaccccgGGcGGAugGCUGGc -3'
miRNA:   3'- gGACC--UCgCAGGAG--------------UC-CCUugCGACC- -5'
28860 3' -57.1 NC_006146.1 + 65098 0.69 0.779023
Target:  5'- cCCUGG-GUGUUCUUucccgucuGGGAGCcCUGGg -3'
miRNA:   3'- -GGACCuCGCAGGAGu-------CCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 57320 0.69 0.787985
Target:  5'- aCCUGGAcGCGUggcUCUCuGGGGGCGg-GGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 33730 0.69 0.796815
Target:  5'- uUCUGGAGC-UCCUCcgguccgguGGGuguggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu--------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 170681 0.68 0.805505
Target:  5'- gCCaGGGGCGcCC-CGGGGAccguCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 141203 0.68 0.82243
Target:  5'- aCCaGGGGC-UCCUgGGGGGAa-CUGGg -3'
miRNA:   3'- -GGaCCUCGcAGGAgUCCCUUgcGACC- -5'
28860 3' -57.1 NC_006146.1 + 159826 0.68 0.82243
Target:  5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3'
miRNA:   3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 156816 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 153738 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 150661 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 147583 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 144505 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 141427 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 50841 0.67 0.845795
Target:  5'- uCCUGGcGGUGUCCaggcuggUgGGGGAugagagGCGUUGGc -3'
miRNA:   3'- -GGACC-UCGCAGG-------AgUCCCU------UGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.