miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 43463 0.67 0.869063
Target:  5'- aUCUGGAGCGgcagccUCCUCGGcGGc-CGUUGa -3'
miRNA:   3'- -GGACCUCGC------AGGAGUC-CCuuGCGACc -5'
28860 3' -57.1 NC_006146.1 + 64364 0.67 0.869063
Target:  5'- aCUGGAGUGgauggugCCcacCAGGGGAUGCg-- -3'
miRNA:   3'- gGACCUCGCa------GGa--GUCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 161746 0.67 0.869063
Target:  5'- cCCgGGGGUggcggcugagGUCCg-AGGGGGCGcCUGGg -3'
miRNA:   3'- -GGaCCUCG----------CAGGagUCCCUUGC-GACC- -5'
28860 3' -57.1 NC_006146.1 + 136720 0.67 0.861761
Target:  5'- gCCUGGcccAGgGUCCggCuGGGGGCGCa-- -3'
miRNA:   3'- -GGACC---UCgCAGGa-GuCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 136769 0.67 0.861761
Target:  5'- uCCgGGAggcccggccGCGaUCCUCccccgugaacGGGGcGCGCUGGg -3'
miRNA:   3'- -GGaCCU---------CGC-AGGAG----------UCCCuUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 167886 0.67 0.854262
Target:  5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 169750 0.67 0.854262
Target:  5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 168818 0.67 0.854262
Target:  5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 32938 0.67 0.846574
Target:  5'- cCCgGGAggcccggccGCGaUCCUCccccgugaacGGGGcGCGCUGGg -3'
miRNA:   3'- -GGaCCU---------CGC-AGGAG----------UCCCuUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 128523 0.67 0.846574
Target:  5'- cCCUGGGGCGccCCUCGcccacccuGGcGGCGCgGGa -3'
miRNA:   3'- -GGACCUCGCa-GGAGU--------CCcUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 117018 0.67 0.846574
Target:  5'- aCCUGGGcuaCGcCCUaacGGGGGCGCUGa -3'
miRNA:   3'- -GGACCUc--GCaGGAgu-CCCUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 50841 0.67 0.845795
Target:  5'- uCCUGGcGGUGUCCaggcuggUgGGGGAugagagGCGUUGGc -3'
miRNA:   3'- -GGACC-UCGCAGG-------AgUCCCU------UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 156816 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 150661 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 147583 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 144505 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 141427 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 153738 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 141203 0.68 0.82243
Target:  5'- aCCaGGGGC-UCCUgGGGGGAa-CUGGg -3'
miRNA:   3'- -GGaCCUCGcAGGAgUCCCUUgcGACC- -5'
28860 3' -57.1 NC_006146.1 + 159826 0.68 0.82243
Target:  5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3'
miRNA:   3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.