miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 11173 0.71 0.674069
Target:  5'- --aGGAGCG-CCUCuacggGGGGAAC-CUGGu -3'
miRNA:   3'- ggaCCUCGCaGGAG-----UCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 12313 0.7 0.722926
Target:  5'- gCUGGAGCGgcugUCUCGgcuGGGcauaGACGCUGa -3'
miRNA:   3'- gGACCUCGCa---GGAGU---CCC----UUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 12783 0.66 0.908497
Target:  5'- aCCUGGAcGCGgcCCUgCAGGGGcggACGUacGGa -3'
miRNA:   3'- -GGACCU-CGCa-GGA-GUCCCU---UGCGa-CC- -5'
28860 3' -57.1 NC_006146.1 + 12859 0.66 0.889743
Target:  5'- gCCUGGGGCGaggCU----GGGugGCUGGg -3'
miRNA:   3'- -GGACCUCGCa--GGagucCCUugCGACC- -5'
28860 3' -57.1 NC_006146.1 + 22618 0.66 0.914306
Target:  5'- gCUGGAGC-UCCuguUCuGGG--UGCUGGg -3'
miRNA:   3'- gGACCUCGcAGG---AGuCCCuuGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 24084 0.67 0.883059
Target:  5'- gCUGGcGCGgCCUCGccuGGGACGCgGGu -3'
miRNA:   3'- gGACCuCGCaGGAGUc--CCUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 32890 0.66 0.889743
Target:  5'- gCCUGGcaccAGgGUCCggCuGGGGGCGCa-- -3'
miRNA:   3'- -GGACC----UCgCAGGa-GuCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 32938 0.67 0.846574
Target:  5'- cCCgGGAggcccggccGCGaUCCUCccccgugaacGGGGcGCGCUGGg -3'
miRNA:   3'- -GGaCCU---------CGC-AGGAG----------UCCCuUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 33559 0.71 0.664168
Target:  5'- cCCUGGuGC-UCCUcCGGGGGucgccgcguuCGCUGGu -3'
miRNA:   3'- -GGACCuCGcAGGA-GUCCCUu---------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 33730 0.69 0.796815
Target:  5'- uUCUGGAGC-UCCUCcgguccgguGGGuguggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu--------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 33917 0.72 0.594598
Target:  5'- uCCUGGAGC-UCCUCcguccgguGGGugcggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu-------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 40013 0.67 0.883059
Target:  5'- -gUGuGGGCGUag-CAGGGGGCcuGCUGGg -3'
miRNA:   3'- ggAC-CUCGCAggaGUCCCUUG--CGACC- -5'
28860 3' -57.1 NC_006146.1 + 43463 0.67 0.869063
Target:  5'- aUCUGGAGCGgcagccUCCUCGGcGGc-CGUUGa -3'
miRNA:   3'- -GGACCUCGC------AGGAGUC-CCuuGCGACc -5'
28860 3' -57.1 NC_006146.1 + 43577 0.66 0.902465
Target:  5'- aCU-GAGCGUUCcCGGGGAGCGg-GGc -3'
miRNA:   3'- gGAcCUCGCAGGaGUCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 44056 1.12 0.00194
Target:  5'- aCCUGGAGCGUCCUCAGGGAACGCUGGu -3'
miRNA:   3'- -GGACCUCGCAGGAGUCCCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 44087 0.66 0.908497
Target:  5'- aCUGGGGUGguuccaCCUCGGGccgcGCGCUcGGc -3'
miRNA:   3'- gGACCUCGCa-----GGAGUCCcu--UGCGA-CC- -5'
28860 3' -57.1 NC_006146.1 + 45327 0.67 0.883059
Target:  5'- uCCUGGAcguuGCGgggaUUCGGGGGAgGCcGGu -3'
miRNA:   3'- -GGACCU----CGCag--GAGUCCCUUgCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 46750 0.69 0.776309
Target:  5'- gCUGGccAGgGUCCUCgccucccgaccccgGGcGGAugGCUGGc -3'
miRNA:   3'- gGACC--UCgCAGGAG--------------UC-CCUugCGACC- -5'
28860 3' -57.1 NC_006146.1 + 49531 0.74 0.507243
Target:  5'- uCCgGGGGC-UCCUCuGGGGGCGgaGGc -3'
miRNA:   3'- -GGaCCUCGcAGGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 50841 0.67 0.845795
Target:  5'- uCCUGGcGGUGUCCaggcuggUgGGGGAugagagGCGUUGGc -3'
miRNA:   3'- -GGACC-UCGCAGG-------AgUCCCU------UGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.