miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 53795 0.66 0.889084
Target:  5'- gCCUcGGcccgcgcGGCGUCCaUAGcGGGGgGCUGGa -3'
miRNA:   3'- -GGA-CC-------UCGCAGGaGUC-CCUUgCGACC- -5'
28860 3' -57.1 NC_006146.1 + 56259 0.7 0.732509
Target:  5'- --cGGGGcCGUCCUCggcGGGGAGCGa-GGa -3'
miRNA:   3'- ggaCCUC-GCAGGAG---UCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 57320 0.69 0.787985
Target:  5'- aCCUGGAcGCGUggcUCUCuGGGGGCGg-GGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 57761 0.67 0.876164
Target:  5'- --cGGAuaG-CCUCGGGGGGCGUgGGa -3'
miRNA:   3'- ggaCCUcgCaGGAGUCCCUUGCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 64102 0.67 0.883059
Target:  5'- aCCUGG-G-GUCCUCGaGGAugGCacgGGu -3'
miRNA:   3'- -GGACCuCgCAGGAGUcCCUugCGa--CC- -5'
28860 3' -57.1 NC_006146.1 + 64364 0.67 0.869063
Target:  5'- aCUGGAGUGgauggugCCcacCAGGGGAUGCg-- -3'
miRNA:   3'- gGACCUCGCa------GGa--GUCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 65098 0.69 0.779023
Target:  5'- cCCUGG-GUGUUCUUucccgucuGGGAGCcCUGGg -3'
miRNA:   3'- -GGACCuCGCAGGAGu-------CCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 71491 0.67 0.883059
Target:  5'- uUUGGccGGUGgugCCUgGGGGAgGCGUUGGa -3'
miRNA:   3'- gGACC--UCGCa--GGAgUCCCU-UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 71750 0.66 0.889743
Target:  5'- gCCUGGAGUGggaCUaau-GGACGCUGGc -3'
miRNA:   3'- -GGACCUCGCag-GAguccCUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 73432 0.66 0.908497
Target:  5'- cCCcGG-GCGUUguagaaCUCGGGGA-CGUUGGu -3'
miRNA:   3'- -GGaCCuCGCAG------GAGUCCCUuGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 78378 0.66 0.91989
Target:  5'- cCCagGGAGguguccuccuCGUCCUCugauaGGAGcCGCUGGg -3'
miRNA:   3'- -GGa-CCUC----------GCAGGAGuc---CCUU-GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 89856 0.71 0.674069
Target:  5'- -gUGGcGCGUCCUCgauugccucaguGGGGGGCGaUUGGg -3'
miRNA:   3'- ggACCuCGCAGGAG------------UCCCUUGC-GACC- -5'
28860 3' -57.1 NC_006146.1 + 92092 0.69 0.769935
Target:  5'- gCCUGGAcGCGUgggCCUCccAGGGAGuauUGCUGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAG--UCCCUU---GCGACc -5'
28860 3' -57.1 NC_006146.1 + 102377 0.67 0.876164
Target:  5'- --aGGucuccGgGUCCUCGGGGAGCuGgUGGu -3'
miRNA:   3'- ggaCCu----CgCAGGAGUCCCUUG-CgACC- -5'
28860 3' -57.1 NC_006146.1 + 104976 0.72 0.584709
Target:  5'- gCCUGGGGC-UCCcgAGGGGGCuCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGagUCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 111281 0.7 0.722926
Target:  5'- gCCUGGAGCacuuuuUCCUCaaggaccugacGGGGGACGCc-- -3'
miRNA:   3'- -GGACCUCGc-----AGGAG-----------UCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 113041 0.66 0.914306
Target:  5'- gCCaGGAcGuCGgCCUCGGGGuccACGUUGGc -3'
miRNA:   3'- -GGaCCU-C-GCaGGAGUCCCu--UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 114603 0.71 0.683938
Target:  5'- gCCUGG-GCcaCCUCgAGGcGGCGCUGGa -3'
miRNA:   3'- -GGACCuCGcaGGAG-UCCcUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 117018 0.67 0.846574
Target:  5'- aCCUGGGcuaCGcCCUaacGGGGGCGCUGa -3'
miRNA:   3'- -GGACCUc--GCaGGAgu-CCCUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 118272 0.66 0.919342
Target:  5'- gCCa-GAGCGgcaUCCUCAGGGGGCacgagauggcccaGCUGa -3'
miRNA:   3'- -GGacCUCGC---AGGAGUCCCUUG-------------CGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.