Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28860 | 3' | -57.1 | NC_006146.1 | + | 170681 | 0.68 | 0.805505 |
Target: 5'- gCCaGGGGCGcCC-CGGGGAccguCGCgGGg -3' miRNA: 3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 170402 | 0.72 | 0.594598 |
Target: 5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3' miRNA: 3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 169750 | 0.67 | 0.854262 |
Target: 5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3' miRNA: 3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 169471 | 0.72 | 0.594598 |
Target: 5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3' miRNA: 3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 168818 | 0.67 | 0.854262 |
Target: 5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3' miRNA: 3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 168539 | 0.72 | 0.594598 |
Target: 5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3' miRNA: 3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 167886 | 0.67 | 0.854262 |
Target: 5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3' miRNA: 3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 167607 | 0.72 | 0.594598 |
Target: 5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3' miRNA: 3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 161746 | 0.67 | 0.869063 |
Target: 5'- cCCgGGGGUggcggcugagGUCCg-AGGGGGCGcCUGGg -3' miRNA: 3'- -GGaCCUCG----------CAGGagUCCCUUGC-GACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 159826 | 0.68 | 0.82243 |
Target: 5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3' miRNA: 3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 157026 | 0.77 | 0.368119 |
Target: 5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3' miRNA: 3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 156816 | 0.68 | 0.830651 |
Target: 5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3' miRNA: 3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 153948 | 0.77 | 0.368119 |
Target: 5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3' miRNA: 3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 153738 | 0.68 | 0.830651 |
Target: 5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3' miRNA: 3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 150870 | 0.77 | 0.368119 |
Target: 5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3' miRNA: 3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 150661 | 0.68 | 0.830651 |
Target: 5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3' miRNA: 3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 147792 | 0.77 | 0.368119 |
Target: 5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3' miRNA: 3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 147583 | 0.68 | 0.830651 |
Target: 5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3' miRNA: 3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 144714 | 0.77 | 0.368119 |
Target: 5'- aCUGG-GCGgCUgCGGGGGACGCUGGc -3' miRNA: 3'- gGACCuCGCaGGaGUCCCUUGCGACC- -5' |
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28860 | 3' | -57.1 | NC_006146.1 | + | 144505 | 0.68 | 0.830651 |
Target: 5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3' miRNA: 3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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