miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 132960 0.75 0.443241
Target:  5'- -gUGGAuuaucucuGgGUCCUCGGGGGGCGgUGGa -3'
miRNA:   3'- ggACCU--------CgCAGGAGUCCCUUGCgACC- -5'
28860 3' -57.1 NC_006146.1 + 33730 0.69 0.796815
Target:  5'- uUCUGGAGC-UCCUCcgguccgguGGGuguggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu--------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 159826 0.68 0.82243
Target:  5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3'
miRNA:   3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 44087 0.66 0.908497
Target:  5'- aCUGGGGUGguuccaCCUCGGGccgcGCGCUcGGc -3'
miRNA:   3'- gGACCUCGCa-----GGAGUCCcu--UGCGA-CC- -5'
28860 3' -57.1 NC_006146.1 + 33917 0.72 0.594598
Target:  5'- uCCUGGAGC-UCCUCcguccgguGGGugcggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu-------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 167607 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 169471 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 170402 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 56259 0.7 0.732509
Target:  5'- --cGGGGcCGUCCUCggcGGGGAGCGa-GGa -3'
miRNA:   3'- ggaCCUC-GCAGGAG---UCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 57320 0.69 0.787985
Target:  5'- aCCUGGAcGCGUggcUCUCuGGGGGCGg-GGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 92092 0.69 0.769935
Target:  5'- gCCUGGAcGCGUgggCCUCccAGGGAGuauUGCUGc -3'
miRNA:   3'- -GGACCU-CGCA---GGAG--UCCCUU---GCGACc -5'
28860 3' -57.1 NC_006146.1 + 111281 0.7 0.722926
Target:  5'- gCCUGGAGCacuuuuUCCUCaaggaccugacGGGGGACGCc-- -3'
miRNA:   3'- -GGACCUCGc-----AGGAG-----------UCCCUUGCGacc -5'
28860 3' -57.1 NC_006146.1 + 49531 0.74 0.507243
Target:  5'- uCCgGGGGC-UCCUCuGGGGGCGgaGGc -3'
miRNA:   3'- -GGaCCUCGcAGGAGuCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 46750 0.69 0.776309
Target:  5'- gCUGGccAGgGUCCUCgccucccgaccccgGGcGGAugGCUGGc -3'
miRNA:   3'- gGACC--UCgCAGGAG--------------UC-CCUugCGACC- -5'
28860 3' -57.1 NC_006146.1 + 137742 0.73 0.565033
Target:  5'- uUCUGGAGC-UCCUgGGGGuccgcucgucCGCUGGu -3'
miRNA:   3'- -GGACCUCGcAGGAgUCCCuu--------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 33559 0.71 0.664168
Target:  5'- cCCUGGuGC-UCCUcCGGGGGucgccgcguuCGCUGGu -3'
miRNA:   3'- -GGACCuCGcAGGA-GUCCCUu---------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 65098 0.69 0.779023
Target:  5'- cCCUGG-GUGUUCUUucccgucuGGGAGCcCUGGg -3'
miRNA:   3'- -GGACCuCGCAGGAGu-------CCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 170681 0.68 0.805505
Target:  5'- gCCaGGGGCGcCC-CGGGGAccguCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 104976 0.72 0.584709
Target:  5'- gCCUGGGGC-UCCcgAGGGGGCuCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGagUCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 168539 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.