miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 3' -57.1 NC_006146.1 + 50841 0.67 0.845795
Target:  5'- uCCUGGcGGUGUCCaggcuggUgGGGGAugagagGCGUUGGc -3'
miRNA:   3'- -GGACC-UCGCAGG-------AgUCCCU------UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 45327 0.67 0.883059
Target:  5'- uCCUGGAcguuGCGgggaUUCGGGGGAgGCcGGu -3'
miRNA:   3'- -GGACCU----CGCag--GAGUCCCUUgCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 159826 0.68 0.82243
Target:  5'- gCUUGGAGCuGUCCcUAGaGaGGGCGCUGu -3'
miRNA:   3'- -GGACCUCG-CAGGaGUC-C-CUUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 33917 0.72 0.594598
Target:  5'- uCCUGGAGC-UCCUCcguccgguGGGugcggucCGCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGAGu-------CCCuu-----GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 71491 0.67 0.883059
Target:  5'- uUUGGccGGUGgugCCUgGGGGAgGCGUUGGa -3'
miRNA:   3'- gGACC--UCGCa--GGAgUCCCU-UGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 168818 0.67 0.854262
Target:  5'- cCCcGGGGCGgCC-CGGGGAcccuCGCgGGg -3'
miRNA:   3'- -GGaCCUCGCaGGaGUCCCUu---GCGaCC- -5'
28860 3' -57.1 NC_006146.1 + 53795 0.66 0.889084
Target:  5'- gCCUcGGcccgcgcGGCGUCCaUAGcGGGGgGCUGGa -3'
miRNA:   3'- -GGA-CC-------UCGCAGGaGUC-CCUUgCGACC- -5'
28860 3' -57.1 NC_006146.1 + 44087 0.66 0.908497
Target:  5'- aCUGGGGUGguuccaCCUCGGGccgcGCGCUcGGc -3'
miRNA:   3'- gGACCUCGCa-----GGAGUCCcu--UGCGA-CC- -5'
28860 3' -57.1 NC_006146.1 + 104976 0.72 0.584709
Target:  5'- gCCUGGGGC-UCCcgAGGGGGCuCUGGg -3'
miRNA:   3'- -GGACCUCGcAGGagUCCCUUGcGACC- -5'
28860 3' -57.1 NC_006146.1 + 137742 0.73 0.565033
Target:  5'- uUCUGGAGC-UCCUgGGGGuccgcucgucCGCUGGu -3'
miRNA:   3'- -GGACCUCGcAGGAgUCCCuu--------GCGACC- -5'
28860 3' -57.1 NC_006146.1 + 168539 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 167607 0.72 0.594598
Target:  5'- cCCUGGGG-G-CCUCGGGG-GCGgaGGg -3'
miRNA:   3'- -GGACCUCgCaGGAGUCCCuUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 43577 0.66 0.902465
Target:  5'- aCU-GAGCGUUCcCGGGGAGCGg-GGc -3'
miRNA:   3'- gGAcCUCGCAGGaGUCCCUUGCgaCC- -5'
28860 3' -57.1 NC_006146.1 + 114603 0.71 0.683938
Target:  5'- gCCUGG-GCcaCCUCgAGGcGGCGCUGGa -3'
miRNA:   3'- -GGACCuCGcaGGAG-UCCcUUGCGACC- -5'
28860 3' -57.1 NC_006146.1 + 122475 0.7 0.703546
Target:  5'- aCUGcGAGCGUUgCUCGGGGAcgGCgGCgGGg -3'
miRNA:   3'- gGAC-CUCGCAG-GAGUCCCU--UG-CGaCC- -5'
28860 3' -57.1 NC_006146.1 + 12313 0.7 0.722926
Target:  5'- gCUGGAGCGgcugUCUCGgcuGGGcauaGACGCUGa -3'
miRNA:   3'- gGACCUCGCa---GGAGU---CCC----UUGCGACc -5'
28860 3' -57.1 NC_006146.1 + 141203 0.68 0.82243
Target:  5'- aCCaGGGGC-UCCUgGGGGGAa-CUGGg -3'
miRNA:   3'- -GGaCCUCGcAGGAgUCCCUUgcGACC- -5'
28860 3' -57.1 NC_006146.1 + 141427 0.68 0.830651
Target:  5'- gCCUGGGGUGgCC--GGGGAGgGgUGGg -3'
miRNA:   3'- -GGACCUCGCaGGagUCCCUUgCgACC- -5'
28860 3' -57.1 NC_006146.1 + 102377 0.67 0.876164
Target:  5'- --aGGucuccGgGUCCUCGGGGAGCuGgUGGu -3'
miRNA:   3'- ggaCCu----CgCAGGAGUCCCUUG-CgACC- -5'
28860 3' -57.1 NC_006146.1 + 161746 0.67 0.869063
Target:  5'- cCCgGGGGUggcggcugagGUCCg-AGGGGGCGcCUGGg -3'
miRNA:   3'- -GGaCCUCG----------CAGGagUCCCUUGC-GACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.