miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 155847 0.65 0.90865
Target:  5'- cGCCAGUGCCuccucgcaggcccgGCGG--GCCcuggCCAGGCg -3'
miRNA:   3'- aUGGUUGCGG--------------CGCCuuUGGa---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 47005 0.66 0.90437
Target:  5'- cACCAGCGUCcagaGCGGAGACUacUCuCuGGUc -3'
miRNA:   3'- aUGGUUGCGG----CGCCUUUGG--AG-GuCCG- -5'
28860 5' -56.7 NC_006146.1 + 154249 0.66 0.90437
Target:  5'- aGCCAG-GCCGCuGGuGGGCCU-CAGGUu -3'
miRNA:   3'- aUGGUUgCGGCG-CC-UUUGGAgGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 47866 0.66 0.90437
Target:  5'- -uCCAGCGCC-CGGAccugGGCCgCCucGGCc -3'
miRNA:   3'- auGGUUGCGGcGCCU----UUGGaGGu-CCG- -5'
28860 5' -56.7 NC_006146.1 + 61418 0.66 0.90437
Target:  5'- cUGCgGugGCCaacGCGGgcACggCCGGGCu -3'
miRNA:   3'- -AUGgUugCGG---CGCCuuUGgaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 111333 0.66 0.90437
Target:  5'- cGCCAccuGCGCCGUGGcccucaucuCCUCCAucGCc -3'
miRNA:   3'- aUGGU---UGCGGCGCCuuu------GGAGGUc-CG- -5'
28860 5' -56.7 NC_006146.1 + 2007 0.66 0.90437
Target:  5'- gACagucGCGCUGCGGGgcggcaacgauGACC-CUAGGCc -3'
miRNA:   3'- aUGgu--UGCGGCGCCU-----------UUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 62406 0.66 0.900613
Target:  5'- uUAUCGACuCCGgaacccCGGGugggcuggcugaagcGGCCUCCGGGCu -3'
miRNA:   3'- -AUGGUUGcGGC------GCCU---------------UUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 33354 0.66 0.898062
Target:  5'- aGCCggGugGCCGcCGGuggguCCgCCGGGCc -3'
miRNA:   3'- aUGG--UugCGGC-GCCuuu--GGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 90834 0.66 0.898062
Target:  5'- aUACCAGagUGCCGCcuuacGCCUCUAGGa -3'
miRNA:   3'- -AUGGUU--GCGGCGccuu-UGGAGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 117986 0.66 0.898062
Target:  5'- gGCCAGCGCCccCGGGgggccacgcaGACCaugCgGGGCu -3'
miRNA:   3'- aUGGUUGCGGc-GCCU----------UUGGa--GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 143435 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 146513 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 149591 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 155746 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 436 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 1367 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2299 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 3231 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 77909 0.66 0.898062
Target:  5'- aACaGGCGCagggGCGGGcGGCCUCgCAGGUg -3'
miRNA:   3'- aUGgUUGCGg---CGCCU-UUGGAG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.