miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 155847 0.65 0.90865
Target:  5'- cGCCAGUGCCuccucgcaggcccgGCGG--GCCcuggCCAGGCg -3'
miRNA:   3'- aUGGUUGCGG--------------CGCCuuUGGa---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 117986 0.66 0.898062
Target:  5'- gGCCAGCGCCccCGGGgggccacgcaGACCaugCgGGGCu -3'
miRNA:   3'- aUGGUUGCGGc-GCCU----------UUGGa--GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 137331 0.66 0.897418
Target:  5'- gACCAGCGaaCGCGGcGAcccccggaggagcACCagggCCAGGCa -3'
miRNA:   3'- aUGGUUGCg-GCGCC-UU-------------UGGa---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 120044 0.66 0.894167
Target:  5'- gGCCAACGCCucucaucccccaccaGCcuGGAcACCgCCAGGa -3'
miRNA:   3'- aUGGUUGCGG---------------CG--CCUuUGGaGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 132054 0.66 0.891526
Target:  5'- -cCCAgaacGCGCUGCuGGAcgugagcuGCC-CCAGGCu -3'
miRNA:   3'- auGGU----UGCGGCG-CCUu-------UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 73406 0.66 0.891526
Target:  5'- aGCgGAgGUCGCGGAuguugaggucCCcCCGGGCg -3'
miRNA:   3'- aUGgUUgCGGCGCCUuu--------GGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 104840 0.66 0.891526
Target:  5'- gUGCCAugGCCGgGGcagGAACUuugcgugCCugAGGCa -3'
miRNA:   3'- -AUGGUugCGGCgCC---UUUGGa------GG--UCCG- -5'
28860 5' -56.7 NC_006146.1 + 168512 0.66 0.889521
Target:  5'- gACCAACagagcccucuggaaGcCCGCGGAcGCCugUCCcGGCu -3'
miRNA:   3'- aUGGUUG--------------C-GGCGCCUuUGG--AGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 104672 0.66 0.884766
Target:  5'- aUGCCuGCGCCGCGauagaGggGCagCUGGGCc -3'
miRNA:   3'- -AUGGuUGCGGCGC-----CuuUGgaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 143435 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 146513 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 149591 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 62406 0.66 0.900613
Target:  5'- uUAUCGACuCCGgaacccCGGGugggcuggcugaagcGGCCUCCGGGCu -3'
miRNA:   3'- -AUGGUUGcGGC------GCCU---------------UUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 77909 0.66 0.898062
Target:  5'- aACaGGCGCagggGCGGGcGGCCUCgCAGGUg -3'
miRNA:   3'- aUGgUUGCGg---CGCCU-UUGGAG-GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 42338 0.66 0.898062
Target:  5'- -uCCGAgGCCGCGaacuGCCgcUCCAGGa -3'
miRNA:   3'- auGGUUgCGGCGCcuu-UGG--AGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 3231 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2299 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 1367 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 436 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 155746 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.