miRNA display CGI


Results 1 - 20 of 296 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 44090 1.09 0.002642
Target:  5'- aUACCAACGCCGCGGAAACCUCCAGGCc -3'
miRNA:   3'- -AUGGUUGCGGCGCCUUUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 31510 0.82 0.159684
Target:  5'- -cCCGGCGCCGUGGggGCCUUcuccuacuaaacagCAGGCa -3'
miRNA:   3'- auGGUUGCGGCGCCuuUGGAG--------------GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 170102 0.81 0.186988
Target:  5'- gGCCGGCGCCGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGGCG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 145263 0.79 0.252834
Target:  5'- gACCAGCGCCGUgaucuuggagcugagGGggGCCUCgUAGGUg -3'
miRNA:   3'- aUGGUUGCGGCG---------------CCuuUGGAG-GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 25586 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 19430 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 28664 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16352 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 22508 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13274 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 42707 0.78 0.288352
Target:  5'- -cCCGGCGCCGCGGcGccccccugggccGCCUCCcGGCg -3'
miRNA:   3'- auGGUUGCGGCGCCuU------------UGGAGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 127956 0.78 0.295093
Target:  5'- gGCCu-CGUCGCGGGAGuCCUCCGGaGCu -3'
miRNA:   3'- aUGGuuGCGGCGCCUUU-GGAGGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 53002 0.77 0.308942
Target:  5'- gGCCGugGCCGCGGGggucgaugaccAGCCUCgGGuGCc -3'
miRNA:   3'- aUGGUugCGGCGCCU-----------UUGGAGgUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 51901 0.77 0.345706
Target:  5'- gGCU-GCGUCgGCGGggGCCUCCgAGGCa -3'
miRNA:   3'- aUGGuUGCGG-CGCCuuUGGAGG-UCCG- -5'
28860 5' -56.7 NC_006146.1 + 30273 0.76 0.353426
Target:  5'- cACCAaggaGCGCCGUGGuccCCUCCuGGGCu -3'
miRNA:   3'- aUGGU----UGCGGCGCCuuuGGAGG-UCCG- -5'
28860 5' -56.7 NC_006146.1 + 71694 0.76 0.361266
Target:  5'- cGCCGAgGCCGCGG---CCUCCcuggAGGCg -3'
miRNA:   3'- aUGGUUgCGGCGCCuuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 19993 0.76 0.39382
Target:  5'- gGCCccacGACGCCG-GGAAGggcuuCCUCCGGGCc -3'
miRNA:   3'- aUGG----UUGCGGCgCCUUU-----GGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 61505 0.75 0.402251
Target:  5'- gACCGACgGCCGUccgaucagGGAGGCCUCCGGuGUc -3'
miRNA:   3'- aUGGUUG-CGGCG--------CCUUUGGAGGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 31412 0.75 0.41858
Target:  5'- cACCAGgcacccccccgggUGCCGUGGAGACCuucUCCAGuGCa -3'
miRNA:   3'- aUGGUU-------------GCGGCGCCUUUGG---AGGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 33176 0.75 0.419451
Target:  5'- cACCGccGCGCCGCcgcucGGuccuGGGCCUCCGGGUg -3'
miRNA:   3'- aUGGU--UGCGGCG-----CC----UUUGGAGGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.