miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 905 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 1837 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 3701 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2769 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 117049 0.75 0.437089
Target:  5'- gGCCAGCGUCGCcuaccGCCUCCGGGa -3'
miRNA:   3'- aUGGUUGCGGCGccuu-UGGAGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 24687 0.74 0.442463
Target:  5'- aGCCAugGCCGCcgcuuaccccggaGGAgcccaugcagcacuAGCgUCCAGGCg -3'
miRNA:   3'- aUGGUugCGGCG-------------CCU--------------UUGgAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 167306 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 169170 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 168238 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 15163 0.74 0.455146
Target:  5'- gGgCGACGCCGUGGAAGCgCUgaAGGCc -3'
miRNA:   3'- aUgGUUGCGGCGCCUUUG-GAggUCCG- -5'
28860 5' -56.7 NC_006146.1 + 62364 0.74 0.455146
Target:  5'- -uCCAACGCCGCGccggaGAGGCC-CCuGGCc -3'
miRNA:   3'- auGGUUGCGGCGC-----CUUUGGaGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 15769 0.74 0.464324
Target:  5'- cUGCUgcGACGCCGCGGGGACCUugCCccaccagaAGGUg -3'
miRNA:   3'- -AUGG--UUGCGGCGCCUUUGGA--GG--------UCCG- -5'
28860 5' -56.7 NC_006146.1 + 93807 0.73 0.501958
Target:  5'- cGCCcACGuaGCGGAcGGCCacgUCCAGGCa -3'
miRNA:   3'- aUGGuUGCggCGCCU-UUGG---AGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16952 0.73 0.509647
Target:  5'- gUGCCAGCguccccccaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG---------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 124243 0.73 0.511577
Target:  5'- gGCCAACGCCG-GGGAACUgCuCAGGg -3'
miRNA:   3'- aUGGUUGCGGCgCCUUUGGaG-GUCCg -5'
28860 5' -56.7 NC_006146.1 + 48616 0.73 0.511577
Target:  5'- -uCCAGucgucgggUGCCGUGGggGCgggCUCCGGGCg -3'
miRNA:   3'- auGGUU--------GCGGCGCCuuUG---GAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 20029 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 26185 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13874 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 23107 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.