miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 149591 0.66 0.898062
Target:  5'- gUGCCuGCGCCuucucaGGAggUCUCCgaagGGGCc -3'
miRNA:   3'- -AUGGuUGCGGcg----CCUuuGGAGG----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 69648 0.66 0.898062
Target:  5'- gGCUAAUGggcCCGCGGuccuCCUCCAgcugggggguGGCa -3'
miRNA:   3'- aUGGUUGC---GGCGCCuuu-GGAGGU----------CCG- -5'
28860 5' -56.7 NC_006146.1 + 131100 0.66 0.897418
Target:  5'- -gUCAACgGCCGCcgucccagaagccGGGAG-CUCCGGGCc -3'
miRNA:   3'- auGGUUG-CGGCG-------------CCUUUgGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 137331 0.66 0.897418
Target:  5'- gACCAGCGaaCGCGGcGAcccccggaggagcACCagggCCAGGCa -3'
miRNA:   3'- aUGGUUGCg-GCGCC-UU-------------UGGa---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 54735 0.66 0.896125
Target:  5'- gGCCGAggggagacucagguCGCUGCcgaaGGAGACCagCCAGcGCa -3'
miRNA:   3'- aUGGUU--------------GCGGCG----CCUUUGGa-GGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 132760 0.66 0.895474
Target:  5'- gGCCgGAUGCCGCGGucccgcacgguCgCUgCAGGCu -3'
miRNA:   3'- aUGG-UUGCGGCGCCuuu--------G-GAgGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 120044 0.66 0.894167
Target:  5'- gGCCAACGCCucucaucccccaccaGCcuGGAcACCgCCAGGa -3'
miRNA:   3'- aUGGUUGCGG---------------CG--CCUuUGGaGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 2200 0.66 0.894167
Target:  5'- --aCAugGuCCGCGGAaAuccagcaguuccugcGCCUCCuGGGCa -3'
miRNA:   3'- augGUugC-GGCGCCU-U---------------UGGAGG-UCCG- -5'
28860 5' -56.7 NC_006146.1 + 104840 0.66 0.891526
Target:  5'- gUGCCAugGCCGgGGcagGAACUuugcgugCCugAGGCa -3'
miRNA:   3'- -AUGGUugCGGCgCC---UUUGGa------GG--UCCG- -5'
28860 5' -56.7 NC_006146.1 + 73406 0.66 0.891526
Target:  5'- aGCgGAgGUCGCGGAuguugaggucCCcCCGGGCg -3'
miRNA:   3'- aUGgUUgCGGCGCCUuu--------GGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 56595 0.66 0.891526
Target:  5'- cGCCGAgccCGCCGcCGGucuCCUCgCcGGCg -3'
miRNA:   3'- aUGGUU---GCGGC-GCCuuuGGAG-GuCCG- -5'
28860 5' -56.7 NC_006146.1 + 132054 0.66 0.891526
Target:  5'- -cCCAgaacGCGCUGCuGGAcgugagcuGCC-CCAGGCu -3'
miRNA:   3'- auGGU----UGCGGCG-CCUu-------UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 49008 0.66 0.891526
Target:  5'- gACCGGCuaggaGCCGCaGGGcguUCUCCGGGg -3'
miRNA:   3'- aUGGUUG-----CGGCG-CCUuu-GGAGGUCCg -5'
28860 5' -56.7 NC_006146.1 + 55504 0.66 0.891526
Target:  5'- cGCCAGCuGCCuccugcacgcgaGCGGccaGGGCCUCCAG-Cu -3'
miRNA:   3'- aUGGUUG-CGG------------CGCC---UUUGGAGGUCcG- -5'
28860 5' -56.7 NC_006146.1 + 68139 0.66 0.89086
Target:  5'- cGCC-ACGCCacGCaGGAAaggggcuGCCUCCuccccGGGCa -3'
miRNA:   3'- aUGGuUGCGG--CG-CCUU-------UGGAGG-----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 168512 0.66 0.889521
Target:  5'- gACCAACagagcccucuggaaGcCCGCGGAcGCCugUCCcGGCu -3'
miRNA:   3'- aUGGUUG--------------C-GGCGCCUuUGG--AGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 39382 0.66 0.884766
Target:  5'- cACuCGGCGCC-CGGuuACC-CUGGGCc -3'
miRNA:   3'- aUG-GUUGCGGcGCCuuUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 115365 0.66 0.884766
Target:  5'- gGCCGGCGUgGCGGcgGAGCUggaggcCCuGGCc -3'
miRNA:   3'- aUGGUUGCGgCGCC--UUUGGa-----GGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 169673 0.66 0.884766
Target:  5'- gGCgGGCGCgCGUGGcccGCCcCCGGGUc -3'
miRNA:   3'- aUGgUUGCG-GCGCCuu-UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 168741 0.66 0.884766
Target:  5'- gGCgGGCGCgCGUGGcccGCCcCCGGGUc -3'
miRNA:   3'- aUGgUUGCG-GCGCCuu-UGGaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.