miRNA display CGI


Results 41 - 60 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 168490 0.66 0.884766
Target:  5'- gGCCAcguguggagGC-CCGCGGAGagGCCguguguggaggCCGGGCc -3'
miRNA:   3'- aUGGU---------UGcGGCGCCUU--UGGa----------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 169422 0.66 0.884766
Target:  5'- gGCCAcguguggagGC-CCGCGGAGagGCCguguguggaggCCGGGCc -3'
miRNA:   3'- aUGGU---------UGcGGCGCCUU--UGGa----------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 170353 0.66 0.884766
Target:  5'- gGCCAcguguggagGC-CCGCGGAGagGCCguguguggaggCCGGGCc -3'
miRNA:   3'- aUGGU---------UGcGGCGCCUU--UGGa----------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 168741 0.66 0.884766
Target:  5'- gGCgGGCGCgCGUGGcccGCCcCCGGGUc -3'
miRNA:   3'- aUGgUUGCG-GCGCCuu-UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 41053 0.66 0.884766
Target:  5'- --gCGGCgGCCcUGGggGCCUCgGGGUg -3'
miRNA:   3'- augGUUG-CGGcGCCuuUGGAGgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 137612 0.66 0.884766
Target:  5'- cGgCGGCGCaGCGGu-GCCcagCCGGGCc -3'
miRNA:   3'- aUgGUUGCGgCGCCuuUGGa--GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 39382 0.66 0.884766
Target:  5'- cACuCGGCGCC-CGGuuACC-CUGGGCc -3'
miRNA:   3'- aUG-GUUGCGGcGCCuuUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 167809 0.66 0.884766
Target:  5'- gGCgGGCGCgCGUGGcccGCCcCCGGGUc -3'
miRNA:   3'- aUGgUUGCG-GCGCCuu-UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 120405 0.66 0.884766
Target:  5'- cACCGACGggGUGGggGCCaaCCuGGCc -3'
miRNA:   3'- aUGGUUGCggCGCCuuUGGa-GGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 50283 0.66 0.884766
Target:  5'- gGCCAagggGCGCa--GGAGAUCUgUCAGGCg -3'
miRNA:   3'- aUGGU----UGCGgcgCCUUUGGA-GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 57854 0.66 0.884766
Target:  5'- gGCCAACGUgGaccccGAGGCCgacguccugCCGGGCg -3'
miRNA:   3'- aUGGUUGCGgCgc---CUUUGGa--------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 167558 0.66 0.884766
Target:  5'- gGCCAcguguggagGC-CCGCGGAGagGCCguguguggaggCCGGGCc -3'
miRNA:   3'- aUGGU---------UGcGGCGCCUU--UGGa----------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 43322 0.66 0.884077
Target:  5'- gGCCGGCGCgGCcucGGccgcccaGGGCCagCAGGCg -3'
miRNA:   3'- aUGGUUGCGgCG---CC-------UUUGGagGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 131066 0.66 0.884077
Target:  5'- cGCCGGCccacuguGCgGCcGAGGCCgCCGGGCc -3'
miRNA:   3'- aUGGUUG-------CGgCGcCUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 55700 0.66 0.880604
Target:  5'- gGCCGcCGCCGgGGGgcucugcccgccgcuGGCCUCCGcGUa -3'
miRNA:   3'- aUGGUuGCGGCgCCU---------------UUGGAGGUcCG- -5'
28860 5' -56.7 NC_006146.1 + 46795 0.66 0.877786
Target:  5'- gGCCGGCGCga-GGGcaaaGGCCUCUGGGUu -3'
miRNA:   3'- aUGGUUGCGgcgCCU----UUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 44325 0.66 0.877786
Target:  5'- gGCCGugGCaGcCGGggGCUUCugcaCAGGUg -3'
miRNA:   3'- aUGGUugCGgC-GCCuuUGGAG----GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 154627 0.66 0.877786
Target:  5'- aACCcgaggaGGCGCC-CGGAGcgagGCCgggcaggCCGGGCa -3'
miRNA:   3'- aUGG------UUGCGGcGCCUU----UGGa------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 151549 0.66 0.877786
Target:  5'- aACCcgaggaGGCGCC-CGGAGcgagGCCgggcaggCCGGGCa -3'
miRNA:   3'- aUGG------UUGCGGcGCCUU----UGGa------GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 148471 0.66 0.877786
Target:  5'- aACCcgaggaGGCGCC-CGGAGcgagGCCgggcaggCCGGGCa -3'
miRNA:   3'- aUGG------UUGCGGcGCCUU----UGGa------GGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.