miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 436 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 905 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 1367 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 1837 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2007 0.66 0.90437
Target:  5'- gACagucGCGCUGCGGGgcggcaacgauGACC-CUAGGCc -3'
miRNA:   3'- aUGgu--UGCGGCGCCU-----------UUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2200 0.66 0.894167
Target:  5'- --aCAugGuCCGCGGAaAuccagcaguuccugcGCCUCCuGGGCa -3'
miRNA:   3'- augGUugC-GGCGCCU-U---------------UGGAGG-UCCG- -5'
28860 5' -56.7 NC_006146.1 + 2299 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 2372 0.67 0.87059
Target:  5'- aGCCGggacagGCGuCCGCGG--GCUUCCagaGGGCu -3'
miRNA:   3'- aUGGU------UGC-GGCGCCuuUGGAGG---UCCG- -5'
28860 5' -56.7 NC_006146.1 + 2769 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 3231 0.66 0.898062
Target:  5'- cGCCccucGgGUCGCGGGAcacGCCcCCGGGUc -3'
miRNA:   3'- aUGGu---UgCGGCGCCUU---UGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 3374 0.71 0.63133
Target:  5'- aAUCAACgGCCGCGGcguCCUaCAGGCc -3'
miRNA:   3'- aUGGUUG-CGGCGCCuuuGGAgGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 3701 0.75 0.428216
Target:  5'- gGCCGcGCGCCGCcccccGGGACC-CCGGGCg -3'
miRNA:   3'- aUGGU-UGCGGCGc----CUUUGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 4369 0.73 0.540868
Target:  5'- gGCCAcgGCcCCGCGGGcuCC-CCAGGCc -3'
miRNA:   3'- aUGGU--UGcGGCGCCUuuGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 4960 0.67 0.847763
Target:  5'- gACCAGgGgCCaCGaGAGCCUCCuGGCg -3'
miRNA:   3'- aUGGUUgC-GGcGCcUUUGGAGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 12450 0.7 0.691959
Target:  5'- aGCCAgGCGCCGgGGc--CUUUCAGGCc -3'
miRNA:   3'- aUGGU-UGCGGCgCCuuuGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13274 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13874 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13983 0.68 0.778972
Target:  5'- -gUCAGCGCCGCcacccAGGCCUcggCCGGGCu -3'
miRNA:   3'- auGGUUGCGGCGcc---UUUGGA---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 14061 0.7 0.671855
Target:  5'- cGCCGGCugGCUGCGGu--CCUcCCGGGUc -3'
miRNA:   3'- aUGGUUG--CGGCGCCuuuGGA-GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 14846 0.7 0.691959
Target:  5'- -cCCGGgGCCGCgGGAGGCCgagggggcagCCAGGg -3'
miRNA:   3'- auGGUUgCGGCG-CCUUUGGa---------GGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.