miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 15140 0.7 0.721725
Target:  5'- -cUCAGgGCCccuuCGGAGACCUCCugagaAGGCg -3'
miRNA:   3'- auGGUUgCGGc---GCCUUUGGAGG-----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 15163 0.74 0.455146
Target:  5'- gGgCGACGCCGUGGAAGCgCUgaAGGCc -3'
miRNA:   3'- aUgGUUGCGGCGCCUUUG-GAggUCCG- -5'
28860 5' -56.7 NC_006146.1 + 15529 0.7 0.691959
Target:  5'- aGCCAgGCGCCGgGGc--CUUUCAGGCc -3'
miRNA:   3'- aUGGU-UGCGGCgCCuuuGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 15769 0.74 0.464324
Target:  5'- cUGCUgcGACGCCGCGGGGACCUugCCccaccagaAGGUg -3'
miRNA:   3'- -AUGG--UUGCGGCGCCUUUGGA--GG--------UCCG- -5'
28860 5' -56.7 NC_006146.1 + 16352 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16492 0.67 0.87059
Target:  5'- cGCgGACGCCGUG---ACCaaCAGGCa -3'
miRNA:   3'- aUGgUUGCGGCGCcuuUGGagGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16952 0.73 0.509647
Target:  5'- gUGCCAGCguccccccaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG---------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 18023 0.68 0.805969
Target:  5'- uUGCCcuGCGCC-CGGGGccACCUCCAccgucaucgccGGCu -3'
miRNA:   3'- -AUGGu-UGCGGcGCCUU--UGGAGGU-----------CCG- -5'
28860 5' -56.7 NC_006146.1 + 18218 0.7 0.721725
Target:  5'- -cUCAGgGCCccuuCGGAGACCUCCugagaAGGCg -3'
miRNA:   3'- auGGUUgCGGc---GCCUUUGGAGG-----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 18607 0.7 0.691959
Target:  5'- aGCCAgGCGCCGgGGc--CUUUCAGGCc -3'
miRNA:   3'- aUGGU-UGCGGCgCCuuuGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 19430 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 19993 0.76 0.39382
Target:  5'- gGCCccacGACGCCG-GGAAGggcuuCCUCCGGGCc -3'
miRNA:   3'- aUGG----UUGCGGCgCCUUU-----GGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 20029 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 20340 0.68 0.823207
Target:  5'- gGCCAGCagauCCGCGuGuucuccuGCCUCCuGGCc -3'
miRNA:   3'- aUGGUUGc---GGCGC-Cuu-----UGGAGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 20586 0.68 0.814669
Target:  5'- gGCCuGCGCC-CGGGcgaggacuacgAGuCCUUCAGGCu -3'
miRNA:   3'- aUGGuUGCGGcGCCU-----------UU-GGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 20897 0.68 0.814669
Target:  5'- gGCCAAgGCCuucGUGGAGGCCcugagUCC-GGCc -3'
miRNA:   3'- aUGGUUgCGG---CGCCUUUGG-----AGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 21101 0.68 0.805969
Target:  5'- uUGCCcuGCGCC-CGGGGccACCUCCAccgucaucgccGGCu -3'
miRNA:   3'- -AUGGu-UGCGGcGCCUU--UGGAGGU-----------CCG- -5'
28860 5' -56.7 NC_006146.1 + 21296 0.7 0.721725
Target:  5'- -cUCAGgGCCccuuCGGAGACCUCCugagaAGGCg -3'
miRNA:   3'- auGGUUgCGGc---GCCUUUGGAGG-----UCCG- -5'
28860 5' -56.7 NC_006146.1 + 21685 0.7 0.691959
Target:  5'- aGCCAgGCGCCGgGGc--CUUUCAGGCc -3'
miRNA:   3'- aUGGU-UGCGGCgCCuuuGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 22185 0.67 0.863184
Target:  5'- aACCGGCGauuaaGCGGAa--CUCaCAGGCu -3'
miRNA:   3'- aUGGUUGCgg---CGCCUuugGAG-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.