miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 31510 0.82 0.159684
Target:  5'- -cCCGGCGCCGUGGggGCCUUcuccuacuaaacagCAGGCa -3'
miRNA:   3'- auGGUUGCGGCGCCuuUGGAG--------------GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16952 0.73 0.509647
Target:  5'- gUGCCAGCguccccccaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG---------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13874 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 155847 0.65 0.90865
Target:  5'- cGCCAGUGCCuccucgcaggcccgGCGG--GCCcuggCCAGGCg -3'
miRNA:   3'- aUGGUUGCGG--------------CGCCuuUGGa---GGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16352 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 19430 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 25586 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 28664 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 33176 0.75 0.419451
Target:  5'- cACCGccGCGCCGCcgcucGGuccuGGGCCUCCGGGUg -3'
miRNA:   3'- aUGGU--UGCGGCG-----CC----UUUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 93807 0.73 0.501958
Target:  5'- cGCCcACGuaGCGGAcGGCCacgUCCAGGCa -3'
miRNA:   3'- aUGGuUGCggCGCCU-UUGG---AGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 168238 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 31412 0.75 0.41858
Target:  5'- cACCAGgcacccccccgggUGCCGUGGAGACCuucUCCAGuGCa -3'
miRNA:   3'- aUGGUU-------------GCGGCGCCUUUGG---AGGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 170102 0.81 0.186988
Target:  5'- gGCCGGCGCCGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGGCG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 169170 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 145263 0.79 0.252834
Target:  5'- gACCAGCGCCGUgaucuuggagcugagGGggGCCUCgUAGGUg -3'
miRNA:   3'- aUGGUUGCGGCG---------------CCuuUGGAG-GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 51901 0.77 0.345706
Target:  5'- gGCU-GCGUCgGCGGggGCCUCCgAGGCa -3'
miRNA:   3'- aUGGuUGCGG-CGCCuuUGGAGG-UCCG- -5'
28860 5' -56.7 NC_006146.1 + 62364 0.74 0.455146
Target:  5'- -uCCAACGCCGCGccggaGAGGCC-CCuGGCc -3'
miRNA:   3'- auGGUUGCGGCGC-----CUUUGGaGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 48616 0.73 0.511577
Target:  5'- -uCCAGucgucgggUGCCGUGGggGCgggCUCCGGGCg -3'
miRNA:   3'- auGGUU--------GCGGCGCCuuUG---GAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13274 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 22508 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.