miRNA display CGI


Results 21 - 40 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28860 5' -56.7 NC_006146.1 + 26185 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 13874 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 31412 0.75 0.41858
Target:  5'- cACCAGgcacccccccgggUGCCGUGGAGACCuucUCCAGuGCa -3'
miRNA:   3'- aUGGUU-------------GCGGCGCCUUUGG---AGGUC-CG- -5'
28860 5' -56.7 NC_006146.1 + 13274 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 118881 0.71 0.63133
Target:  5'- aGCCccucCGCCGCGGAcuGCCU-CAGGUu -3'
miRNA:   3'- aUGGuu--GCGGCGCCUu-UGGAgGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 4369 0.73 0.540868
Target:  5'- gGCCAcgGCcCCGCGGGcuCC-CCAGGCc -3'
miRNA:   3'- aUGGU--UGcGGCGCCUuuGGaGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16952 0.73 0.509647
Target:  5'- gUGCCAGCguccccccaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG---------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 145263 0.79 0.252834
Target:  5'- gACCAGCGCCGUgaucuuggagcugagGGggGCCUCgUAGGUg -3'
miRNA:   3'- aUGGUUGCGGCG---------------CCuuUGGAG-GUCCG- -5'
28860 5' -56.7 NC_006146.1 + 51961 0.73 0.531037
Target:  5'- aACUGGCGCCGaCGGGGAggUCUCC-GGCa -3'
miRNA:   3'- aUGGUUGCGGC-GCCUUU--GGAGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 170102 0.81 0.186988
Target:  5'- gGCCGGCGCCGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGGCG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 48616 0.73 0.511577
Target:  5'- -uCCAGucgucgggUGCCGUGGggGCgggCUCCGGGCg -3'
miRNA:   3'- auGGUU--------GCGGCGCCuuUG---GAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 29263 0.73 0.519327
Target:  5'- gUGCCAGCgucccccgcaGCCGCccagucucuGCCUCCAGGCa -3'
miRNA:   3'- -AUGGUUG----------CGGCGccuu-----UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 169170 0.74 0.446066
Target:  5'- gGCCGGCGCCuGCaggGGggGCCggCgGGGCg -3'
miRNA:   3'- aUGGUUGCGG-CG---CCuuUGGa-GgUCCG- -5'
28860 5' -56.7 NC_006146.1 + 33176 0.75 0.419451
Target:  5'- cACCGccGCGCCGCcgcucGGuccuGGGCCUCCGGGUg -3'
miRNA:   3'- aUGGU--UGCGGCG-----CC----UUUGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 25586 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 16352 0.79 0.268857
Target:  5'- gACCGGCGCCccagagccccuCGGGuccGCCUCCAGGCg -3'
miRNA:   3'- aUGGUUGCGGc----------GCCUu--UGGAGGUCCG- -5'
28860 5' -56.7 NC_006146.1 + 169270 0.71 0.661751
Target:  5'- gGCCGGgGCCugGCGGggGCCagcgcggggUCCcgGGGCg -3'
miRNA:   3'- aUGGUUgCGG--CGCCuuUGG---------AGG--UCCG- -5'
28860 5' -56.7 NC_006146.1 + 129127 0.71 0.651623
Target:  5'- aGCgGGCGCC-CGGGcgcagGGCCUCC-GGCg -3'
miRNA:   3'- aUGgUUGCGGcGCCU-----UUGGAGGuCCG- -5'
28860 5' -56.7 NC_006146.1 + 99320 0.71 0.611039
Target:  5'- gGCCAGaccUGCUGCGGAAGCCgCuCuGGCu -3'
miRNA:   3'- aUGGUU---GCGGCGCCUUUGGaG-GuCCG- -5'
28860 5' -56.7 NC_006146.1 + 102532 0.73 0.550759
Target:  5'- cACCAGCaCCGCcacGGGGAUCUCCacagAGGCg -3'
miRNA:   3'- aUGGUUGcGGCG---CCUUUGGAGG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.