miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 115236 0.66 0.474324
Target:  5'- gCUGGccuucaacgccgccuGGCUcCGGCUGCUGCaccccucggGGGCCc -3'
miRNA:   3'- -GACC---------------CCGA-GCCGGCGGCGgca------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 142056 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 122803 0.66 0.452987
Target:  5'- -gGGcGGCcgaggccgcgcugUCGGCCGCCGUgagcgaguaCGUGGaCCg -3'
miRNA:   3'- gaCC-CCG-------------AGCCGGCGGCG---------GCACCcGG- -5'
28861 3' -67.3 NC_006146.1 + 40861 0.66 0.440438
Target:  5'- uUGGaGGCcCGGCuCGCgguccggagacggaGCCG-GGGCCu -3'
miRNA:   3'- gACC-CCGaGCCG-GCGg-------------CGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 64432 0.66 0.428906
Target:  5'- uUGGGGuCUCGG-CGCCgagacaGCCuUGGGUg -3'
miRNA:   3'- gACCCC-GAGCCgGCGG------CGGcACCCGg -5'
28861 3' -67.3 NC_006146.1 + 126879 0.66 0.428906
Target:  5'- -cGGGGCccUCGGCCGCCcCCuccccGCCg -3'
miRNA:   3'- gaCCCCG--AGCCGGCGGcGGcacc-CGG- -5'
28861 3' -67.3 NC_006146.1 + 170539 0.66 0.426459
Target:  5'- -gGGGGCgCGGCgauuguCGCCGCCcucccucugcucccGUuGGCCg -3'
miRNA:   3'- gaCCCCGaGCCG------GCGGCGG--------------CAcCCGG- -5'
28861 3' -67.3 NC_006146.1 + 94940 0.66 0.428906
Target:  5'- -aGGGGacgUGGCCGCUGCgGUagagggGGGUg -3'
miRNA:   3'- gaCCCCga-GCCGGCGGCGgCA------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 168574 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 145134 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 148212 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 151290 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 13328 0.66 0.470876
Target:  5'- -gGGcGGUggagUCGGCCGCgGCCuacgcgGaGGCCa -3'
miRNA:   3'- gaCC-CCG----AGCCGGCGgCGGca----C-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 63088 0.66 0.470876
Target:  5'- -cGGGGCUUGGUaCGCaGaaG-GGGCCc -3'
miRNA:   3'- gaCCCCGAGCCG-GCGgCggCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 24224 0.66 0.470876
Target:  5'- uUGGGGCcggGGCCGCCcaccgcCCGggaGGGUUg -3'
miRNA:   3'- gACCCCGag-CCGGCGGc-----GGCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 39984 0.66 0.470016
Target:  5'- gCUGaGGCUgcugCGGCCcguagugGCCGgUGUGGGCg -3'
miRNA:   3'- -GACcCCGA----GCCGG-------CGGCgGCACCCGg -5'
28861 3' -67.3 NC_006146.1 + 102328 0.66 0.465728
Target:  5'- -gGGGGCaggcccagaucgaucUCGGCuCGCCaGCgGUccGGGCa -3'
miRNA:   3'- gaCCCCG---------------AGCCG-GCGG-CGgCA--CCCGg -5'
28861 3' -67.3 NC_006146.1 + 115912 0.66 0.462312
Target:  5'- -gGGGGCUucCGGCCaCC-CCGgguacggGGGCa -3'
miRNA:   3'- gaCCCCGA--GCCGGcGGcGGCa------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 157446 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 154368 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.