miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 42624 1.1 0.000331
Target:  5'- cCUGGGGCUCGGCCGCCGCCGUGGGCCu -3'
miRNA:   3'- -GACCCCGAGCCGGCGGCGGCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 55693 0.81 0.044782
Target:  5'- --cGGGCaCGGCCGCCGCCGggGGGCUc -3'
miRNA:   3'- gacCCCGaGCCGGCGGCGGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 127401 0.79 0.065003
Target:  5'- uUGGGGCUgGGCC-CCGCCGccGGaGCCg -3'
miRNA:   3'- gACCCCGAgCCGGcGGCGGCa-CC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 33100 0.78 0.079145
Target:  5'- uCUGGGGCagccgggUGGCCGCCGgCGgguucgccGGGCCg -3'
miRNA:   3'- -GACCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 124607 0.75 0.116698
Target:  5'- -aGGGGCUCGaGCuCGaCCGCCGccaccgGGGCUc -3'
miRNA:   3'- gaCCCCGAGC-CG-GC-GGCGGCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 136717 0.74 0.13467
Target:  5'- -gGGGGUggcCGGCCGCUGCCG-GGuCCg -3'
miRNA:   3'- gaCCCCGa--GCCGGCGGCGGCaCCcGG- -5'
28861 3' -67.3 NC_006146.1 + 33226 0.74 0.137903
Target:  5'- -cGGGGCagccgggUGGCCGCCGgCGgguccgccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 26048 0.74 0.146644
Target:  5'- -gGGGGagagccgcugcaaUUGGcCCGCCGCaaCGUGGGCCg -3'
miRNA:   3'- gaCCCCg------------AGCC-GGCGGCG--GCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 23732 0.73 0.151557
Target:  5'- -aGGGGCgcCGGUcugCGCCGCCGccGGGUCa -3'
miRNA:   3'- gaCCCCGa-GCCG---GCGGCGGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 61597 0.73 0.151557
Target:  5'- ---cGGCUgcagCGGCCGCgGCCG-GGGCCg -3'
miRNA:   3'- gaccCCGA----GCCGGCGgCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 154754 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 148599 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 157832 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 145521 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 142443 0.73 0.158836
Target:  5'- uCUGGGGgaCugagGGCgGCCGCCuugGGGCCc -3'
miRNA:   3'- -GACCCCgaG----CCGgCGGCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 151915 0.73 0.162592
Target:  5'- aCUGGGGuCUggcucCGGCCcuGCCGCCcucucuagGGGCCg -3'
miRNA:   3'- -GACCCC-GA-----GCCGG--CGGCGGca------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 39832 0.73 0.166429
Target:  5'- -cGGcGGcCUCGGCCGCaca-GUGGGCCg -3'
miRNA:   3'- gaCC-CC-GAGCCGGCGgcggCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 170099 0.73 0.166429
Target:  5'- -aGGGGC-CGG-CGCCGCaGgggGGGCCg -3'
miRNA:   3'- gaCCCCGaGCCgGCGGCGgCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33348 0.72 0.178428
Target:  5'- -cGGGGCagccgggUGGCCGCCGguggguCCGccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGC------GGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 167511 0.72 0.18685
Target:  5'- -gGGGGCagGGCUGgCGCC--GGGCCg -3'
miRNA:   3'- gaCCCCGagCCGGCgGCGGcaCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.