miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 898 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 1830 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 2762 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 3694 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 6413 0.67 0.404808
Target:  5'- aUGGGGUcccuUUGGCC-CaggGCCauGUGGGCCc -3'
miRNA:   3'- gACCCCG----AGCCGGcGg--CGG--CACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 13328 0.66 0.470876
Target:  5'- -gGGcGGUggagUCGGCCGCgGCCuacgcgGaGGCCa -3'
miRNA:   3'- gaCC-CCG----AGCCGGCGgCGGca----C-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 14119 0.67 0.402445
Target:  5'- -cGGGGCUgcuggcggCGGCCuacaGCCagguguacgcgcugGCCGUGGaGCUg -3'
miRNA:   3'- gaCCCCGA--------GCCGG----CGG--------------CGGCACC-CGG- -5'
28861 3' -67.3 NC_006146.1 + 14773 0.68 0.32889
Target:  5'- -cGGGGCUCgggcaccuguuGGCgGCUgaggggaaggagagGCCGgccGGGCCg -3'
miRNA:   3'- gaCCCCGAG-----------CCGgCGG--------------CGGCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 15033 0.67 0.381581
Target:  5'- -aGGGGCgccUGGCCagggcCCGCC--GGGCCu -3'
miRNA:   3'- gaCCCCGa--GCCGGc----GGCGGcaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 19727 0.68 0.357079
Target:  5'- -aGGaGGC-CGGCCGCuacCGCCGcauccugcugacgcUGGGCa -3'
miRNA:   3'- gaCC-CCGaGCCGGCG---GCGGC--------------ACCCGg -5'
28861 3' -67.3 NC_006146.1 + 23732 0.73 0.151557
Target:  5'- -aGGGGCgcCGGUcugCGCCGCCGccGGGUCa -3'
miRNA:   3'- gaCCCCGa-GCCG---GCGGCGGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 24224 0.66 0.470876
Target:  5'- uUGGGGCcggGGCCGCCcaccgcCCGggaGGGUUg -3'
miRNA:   3'- gACCCCGag-CCGGCGGc-----GGCa--CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 26048 0.74 0.146644
Target:  5'- -gGGGGagagccgcugcaaUUGGcCCGCCGCaaCGUGGGCCg -3'
miRNA:   3'- gaCCCCg------------AGCC-GGCGGCG--GCACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33100 0.78 0.079145
Target:  5'- uCUGGGGCagccgggUGGCCGCCGgCGgguucgccGGGCCg -3'
miRNA:   3'- -GACCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33170 0.72 0.195619
Target:  5'- gCUGGGcaccGC-CGcGCCGCCGCuCGguccUGGGCCu -3'
miRNA:   3'- -GACCC----CGaGC-CGGCGGCG-GC----ACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33226 0.74 0.137903
Target:  5'- -cGGGGCagccgggUGGCCGCCGgCGgguccgccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGCgGCa-------CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33294 0.67 0.420779
Target:  5'- gCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3'
miRNA:   3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33348 0.72 0.178428
Target:  5'- -cGGGGCagccgggUGGCCGCCGguggguCCGccGGGCCg -3'
miRNA:   3'- gaCCCCGa------GCCGGCGGC------GGCa-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 33416 0.67 0.412746
Target:  5'- cCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3'
miRNA:   3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 34026 0.66 0.437125
Target:  5'- -cGGGGCaggCGGgCGUgGUCccgGGGCCu -3'
miRNA:   3'- gaCCCCGa--GCCgGCGgCGGca-CCCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.