Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28861 | 3' | -67.3 | NC_006146.1 | + | 898 | 0.67 | 0.420779 |
Target: 5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3' miRNA: 3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 1830 | 0.67 | 0.420779 |
Target: 5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3' miRNA: 3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 2762 | 0.67 | 0.420779 |
Target: 5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3' miRNA: 3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 3694 | 0.67 | 0.420779 |
Target: 5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3' miRNA: 3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 6413 | 0.67 | 0.404808 |
Target: 5'- aUGGGGUcccuUUGGCC-CaggGCCauGUGGGCCc -3' miRNA: 3'- gACCCCG----AGCCGGcGg--CGG--CACCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 13328 | 0.66 | 0.470876 |
Target: 5'- -gGGcGGUggagUCGGCCGCgGCCuacgcgGaGGCCa -3' miRNA: 3'- gaCC-CCG----AGCCGGCGgCGGca----C-CCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 14119 | 0.67 | 0.402445 |
Target: 5'- -cGGGGCUgcuggcggCGGCCuacaGCCagguguacgcgcugGCCGUGGaGCUg -3' miRNA: 3'- gaCCCCGA--------GCCGG----CGG--------------CGGCACC-CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 14773 | 0.68 | 0.32889 |
Target: 5'- -cGGGGCUCgggcaccuguuGGCgGCUgaggggaaggagagGCCGgccGGGCCg -3' miRNA: 3'- gaCCCCGAG-----------CCGgCGG--------------CGGCa--CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 15033 | 0.67 | 0.381581 |
Target: 5'- -aGGGGCgccUGGCCagggcCCGCC--GGGCCu -3' miRNA: 3'- gaCCCCGa--GCCGGc----GGCGGcaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 19727 | 0.68 | 0.357079 |
Target: 5'- -aGGaGGC-CGGCCGCuacCGCCGcauccugcugacgcUGGGCa -3' miRNA: 3'- gaCC-CCGaGCCGGCG---GCGGC--------------ACCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 23732 | 0.73 | 0.151557 |
Target: 5'- -aGGGGCgcCGGUcugCGCCGCCGccGGGUCa -3' miRNA: 3'- gaCCCCGa-GCCG---GCGGCGGCa-CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 24224 | 0.66 | 0.470876 |
Target: 5'- uUGGGGCcggGGCCGCCcaccgcCCGggaGGGUUg -3' miRNA: 3'- gACCCCGag-CCGGCGGc-----GGCa--CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 26048 | 0.74 | 0.146644 |
Target: 5'- -gGGGGagagccgcugcaaUUGGcCCGCCGCaaCGUGGGCCg -3' miRNA: 3'- gaCCCCg------------AGCC-GGCGGCG--GCACCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33100 | 0.78 | 0.079145 |
Target: 5'- uCUGGGGCagccgggUGGCCGCCGgCGgguucgccGGGCCg -3' miRNA: 3'- -GACCCCGa------GCCGGCGGCgGCa-------CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33170 | 0.72 | 0.195619 |
Target: 5'- gCUGGGcaccGC-CGcGCCGCCGCuCGguccUGGGCCu -3' miRNA: 3'- -GACCC----CGaGC-CGGCGGCG-GC----ACCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33226 | 0.74 | 0.137903 |
Target: 5'- -cGGGGCagccgggUGGCCGCCGgCGgguccgccGGGCCg -3' miRNA: 3'- gaCCCCGa------GCCGGCGGCgGCa-------CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33294 | 0.67 | 0.420779 |
Target: 5'- gCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3' miRNA: 3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33348 | 0.72 | 0.178428 |
Target: 5'- -cGGGGCagccgggUGGCCGCCGguggguCCGccGGGCCg -3' miRNA: 3'- gaCCCCGa------GCCGGCGGC------GGCa-CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 33416 | 0.67 | 0.412746 |
Target: 5'- cCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3' miRNA: 3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 34026 | 0.66 | 0.437125 |
Target: 5'- -cGGGGCaggCGGgCGUgGUCccgGGGCCu -3' miRNA: 3'- gaCCCCGa--GCCgGCGgCGGca-CCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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