miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 3' -67.3 NC_006146.1 + 142056 0.66 0.45383
Target:  5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3'
miRNA:   3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 122803 0.66 0.452987
Target:  5'- -gGGcGGCcgaggccgcgcugUCGGCCGCCGUgagcgaguaCGUGGaCCg -3'
miRNA:   3'- gaCC-CCG-------------AGCCGGCGGCG---------GCACCcGG- -5'
28861 3' -67.3 NC_006146.1 + 42081 0.66 0.452987
Target:  5'- -aGGGugaccccCUCuGCCGCCGCCccucccuGUGuGGCCg -3'
miRNA:   3'- gaCCCc------GAGcCGGCGGCGG-------CAC-CCGG- -5'
28861 3' -67.3 NC_006146.1 + 45544 0.66 0.445434
Target:  5'- cCUuGGGCUUGGCCGCC-CU---GGCCu -3'
miRNA:   3'- -GAcCCCGAGCCGGCGGcGGcacCCGG- -5'
28861 3' -67.3 NC_006146.1 + 53334 0.66 0.445434
Target:  5'- -aGGaGGCcCGGCgGCCGCg--GGGCg -3'
miRNA:   3'- gaCC-CCGaGCCGgCGGCGgcaCCCGg -5'
28861 3' -67.3 NC_006146.1 + 40861 0.66 0.440438
Target:  5'- uUGGaGGCcCGGCuCGCgguccggagacggaGCCG-GGGCCu -3'
miRNA:   3'- gACC-CCGaGCCG-GCGg-------------CGGCaCCCGG- -5'
28861 3' -67.3 NC_006146.1 + 34026 0.66 0.437125
Target:  5'- -cGGGGCaggCGGgCGUgGUCccgGGGCCu -3'
miRNA:   3'- gaCCCCGa--GCCgGCGgCGGca-CCCGG- -5'
28861 3' -67.3 NC_006146.1 + 94940 0.66 0.428906
Target:  5'- -aGGGGacgUGGCCGCUGCgGUagagggGGGUg -3'
miRNA:   3'- gaCCCCga-GCCGGCGGCGgCA------CCCGg -5'
28861 3' -67.3 NC_006146.1 + 64432 0.66 0.428906
Target:  5'- uUGGGGuCUCGG-CGCCgagacaGCCuUGGGUg -3'
miRNA:   3'- gACCCC-GAGCCgGCGG------CGGcACCCGg -5'
28861 3' -67.3 NC_006146.1 + 169506 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 170437 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 168574 0.66 0.428906
Target:  5'- -cGGGGCcCGGCgCG-UGCCGgGGGaCCc -3'
miRNA:   3'- gaCCCCGaGCCG-GCgGCGGCaCCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 126879 0.66 0.428906
Target:  5'- -cGGGGCccUCGGCCGCCcCCuccccGCCg -3'
miRNA:   3'- gaCCCCG--AGCCGGCGGcGGcacc-CGG- -5'
28861 3' -67.3 NC_006146.1 + 170539 0.66 0.426459
Target:  5'- -gGGGGCgCGGCgauuguCGCCGCCcucccucugcucccGUuGGCCg -3'
miRNA:   3'- gaCCCCGaGCCG------GCGGCGG--------------CAcCCGG- -5'
28861 3' -67.3 NC_006146.1 + 51156 0.67 0.420779
Target:  5'- -aGcGGCagaGGgCGCCGCUGUGGGUg -3'
miRNA:   3'- gaCcCCGag-CCgGCGGCGGCACCCGg -5'
28861 3' -67.3 NC_006146.1 + 39766 0.67 0.420779
Target:  5'- gCUGGGGCUUGGa-GUCagGCU-UGGGCCc -3'
miRNA:   3'- -GACCCCGAGCCggCGG--CGGcACCCGG- -5'
28861 3' -67.3 NC_006146.1 + 2762 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 3694 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 898 0.67 0.420779
Target:  5'- -gGGGGaa-GGCCGCgCGCCGccccccGGGaCCc -3'
miRNA:   3'- gaCCCCgagCCGGCG-GCGGCa-----CCC-GG- -5'
28861 3' -67.3 NC_006146.1 + 33294 0.67 0.420779
Target:  5'- gCUGGGcaccGCUgcGCCGCCGCuCGguccugGGGCUc -3'
miRNA:   3'- -GACCC----CGAgcCGGCGGCG-GCa-----CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.